C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: mitochondrial ribosomal protein L13
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000306185 MRPL13-001 ENSG00000172172 9606 - 8:120395847-120445386 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000306185
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000306185 7.987±0.00 12.994±0.00 3.667±0.00 6.321±0.62 6.026±0.79 10.250±1.34 6.155±1.79 15.094±4.62 4.834±0.00 8.178±0.00 6.389±0.63 19.339±5.98 9.998±2.07 10.525±3.16

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00009J CIL_00009J_0002 CGP 8:120059780-120445402
CIL_00008U CIL_00008U_0002 CGP 8:120380761-120542133

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003735 IEA:NAS structural constituent of ribosome
GO:0005515 IPI protein binding
GO:0005739 IEA mitochondrion
GO:0005761 IDA mitochondrial ribosome
GO:0005762 NAS mitochondrial large ribosomal subunit
GO:0005840 IEA ribosome
GO:0006412 IEA:NAS translation
GO:0044822 IDA poly(A) RNA binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000172387 Mrpl13-001 protein_coding Mus_musculus 0 621
ENSMUST00000164542 Mrpl13-003 nonsense_mediated_decay Mus_musculus 9.99967e-42 174
ENSMUST00000170135 Mrpl13-002 retained_intron Mus_musculus 4.99997e-41 172
ENSMUST00000107207 Mrpl13-004 retained_intron Mus_musculus 4.99997e-41 172

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