C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: nucleic acid binding protein 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000307849 NABP1-002 ENSG00000173559 9606 + 2:191678136-191687572 nonsense_mediated_decay

Expression Patterns

Heat Map
Numeric Values
Transcript'; BreastColonKidneyLungMuscleOvaryTestisENST00000307849
Transcript ID Breast Colon Kidney Lung Muscle Ovary Testis
ENST00000307849 2.963±0.00 1.191±0.00 0.708±0.00 2.545±0.00 0.130±0.00 1.884±1.35 4.289±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00042N CIL_00042N_0002 CGP 2:191678068-191847255

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000724 IMP double-strand break repair via homologous recombination
GO:0003676 IEA nucleic acid binding
GO:0003697 ISS single-stranded DNA binding
GO:0005634 IDA nucleus
GO:0005737 IDA cytoplasm
GO:0006281 IMP DNA repair
GO:0006974 IMP cellular response to DNA damage stimulus
GO:0007093 IMP mitotic cell cycle checkpoint
GO:0010212 IMP response to ionizing radiation
GO:0070876 IDA SOSS complex

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000027279 Nabp1-001 protein_coding Mus_musculus 0 453
ENSMUST00000190103 Nabp1-002 nonsense_mediated_decay Mus_musculus 0 453
ENSMUST00000186684 Nabp1-005 protein_coding Mus_musculus 0 322
ENSMUST00000186003 Nabp1-006 nonsense_mediated_decay Mus_musculus 0 322
ENSMUST00000188051 Nabp1-007 protein_coding Mus_musculus 0 320
ENSMUST00000188204 Nabp1-009 protein_coding Mus_musculus 0 320
ENSMUST00000185534 Nabp1-008 protein_coding Mus_musculus 0 318
ENSMUST00000189542 Nabp1-003 nonsense_mediated_decay Mus_musculus 0 318
ENSMUST00000188303 Nabp1-004 retained_intron Mus_musculus 0 217

Loading