C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: remodeling and spacing factor 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000308488 RSF1-001 ENSG00000048649 9606 - 11:77659996-77821017 protein_coding

Homo sapiens EnsemblGRCh38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonHeartKidneyLungOvaryPlacentaTestisENST00000308488
Transcript ID Adipose Adrenal Brain Breast Colon Heart Kidney Lung Ovary Placenta Testis
ENST00000308488 2.600±0.00 1.339±0.00 1.536±0.54 1.992±0.00 1.397±0.00 1.670±0.00 1.595±0.00 0.945±0.00 2.527±1.19 1.286±0.26 3.264±0.40

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0001JG CIL_0001JG_0002 CGP 11:77659996-77918432

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005515 IPI:IEA protein binding
GO:0005634 IDA nucleus
GO:0005654 TAS nucleoplasm
GO:0006334 IDA nucleosome assembly
GO:0006338 IDA chromatin remodeling
GO:0006352 IDA DNA-templated transcription, initiation
GO:0006355 IEA regulation of transcription, DNA-templated
GO:0008270 IEA zinc ion binding
GO:0016584 IDA nucleosome positioning
GO:0031213 IEA:IPI RSF complex
GO:0034080 TAS CENP-A containing nucleosome assembly
GO:0042393 IDA histone binding
GO:0043392 IDA negative regulation of DNA binding
GO:0045892 IDA negative regulation of transcription, DNA-templated
GO:0045893 IDA positive regulation of transcription, DNA-templated
GO:0050434 IDA positive regulation of viral transcription

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000042399 Rsf1-201 protein_coding Mus_musculus 0 5784
ENSMUST00000107153 Rsf1-001 protein_coding Mus_musculus 0 5784
ENSMUST00000123731 Rsf1-003 processed_transcript Mus_musculus 0 3164
ENSMUST00000156060 Rsf1-002 retained_intron Mus_musculus 0 2667
ENSMUST00000127891 Rsf1-004 processed_transcript Mus_musculus 0 425
ENSMUST00000150288 Rsf1-006 retained_intron Mus_musculus 0 368
ENSMUST00000135270 Rsf1-005 processed_transcript Mus_musculus 0 228

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