C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: ATPase, Ca++ transporting, cardiac muscle, slow twitch 2
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000308664 ATP2A2-001 ENSG00000174437 9606 + 12:110281116-110351090 protein_coding

Homo sapiens EnsemblGRCh38

Genome
Exciting message
Genes
Structures from Ensembl
Connecting
Transcripts
Structures from Ensembl
Connecting
Powered by Dalliance 0.11.11

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBreastColonHeartLiverLungMuscleOvaryTestisENST00000308664
Transcript ID Adipose Adrenal Breast Colon Heart Liver Lung Muscle Ovary Testis
ENST00000308664 7.323±0.00 9.110±0.00 29.299±0.00 11.597±0.00 322.690±281.03 4.920±0.00 8.610±0.00 300.412±84.85 15.407±0.00 15.925±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0001QG CIL_0001QG_0002 CGP 12:110124335-110351093
CIL_0001QF CIL_0001QF_0002 CGP 12:110280756-110403730

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000166 IEA nucleotide binding
GO:0005388 TAS:IEA calcium-transporting ATPase activity
GO:0005515 IPI protein binding
GO:0005524 IEA ATP binding
GO:0005789 IDA endoplasmic reticulum membrane
GO:0005887 TAS integral component of plasma membrane
GO:0006810 TAS transport
GO:0006816 IEA calcium ion transport
GO:0006874 TAS cellular calcium ion homeostasis
GO:0007155 TAS cell adhesion
GO:0007596 TAS blood coagulation
GO:0008022 IPI protein C-terminus binding
GO:0008152 IEA metabolic process
GO:0008544 TAS epidermis development
GO:0010460 TAS positive regulation of heart rate
GO:0016020 IDA membrane
GO:0016021 IEA integral component of membrane
GO:0016529 IDA sarcoplasmic reticulum
GO:0019899 IPI enzyme binding
GO:0031095 TAS platelet dense tubular network membrane
GO:0033017 TAS sarcoplasmic reticulum membrane
GO:0034220 TAS ion transmembrane transport
GO:0043231 TAS intracellular membrane-bounded organelle
GO:0044548 IPI S100 protein binding
GO:0046872 IEA metal ion binding
GO:0055085 TAS transmembrane transport
GO:0055119 TAS relaxation of cardiac muscle
GO:0070296 TAS sarcoplasmic reticulum calcium ion transport
GO:0070588 IEA calcium ion transmembrane transport
GO:0086036 TAS regulation of cardiac muscle cell membrane potential
GO:0086039 TAS calcium-transporting ATPase activity involved in regulation of cardiac muscle cell membrane potential

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000177974 Atp2a2-202 protein_coding Mus_musculus 0 4782
ENSMUST00000031423 Atp2a2-201 protein_coding Mus_musculus 0 4037
ENSMUST00000179939 Atp2a2-203 protein_coding Mus_musculus 0 4037
ENSDART00000047201 atp2a2b-001 protein_coding Danio_rerio 0 1803

Loading