C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: ATPase, Ca++ transporting, cardiac muscle, slow twitch 2
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000177974 Atp2a2-202 ENSMUSG00000029467 10090 - 5:122453514-122502225 protein_coding

Mus musculus EnsemblGRCm38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBladderBrainBreastColonHeartKidneyLiverLungMuscleENSMUST00000177974
Transcript ID Adipose Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle
ENSMUST00000177974 8.422±2.61 101.414±13.90 10.314±0.00 9.358±3.82 9.273±1.69 1988.835±98.15 8.469±0.02 4.902±0.00 36.347±7.76 116.016±70.95

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
GO:0002026 IGI regulation of the force of heart contraction
GO:0005388 IDA calcium-transporting ATPase activity
GO:0005515 IPI protein binding
GO:0005524 IEA ATP binding
GO:0005783 IDA endoplasmic reticulum
GO:0006874 IGI cellular calcium ion homeostasis
GO:0006937 TAS regulation of muscle contraction
GO:0006984 IMP ER-nucleus signaling pathway
GO:0008022 IPI protein C-terminus binding
GO:0008152 IEA metabolic process
GO:0016020 IDA membrane
GO:0016021 IEA integral component of membrane
GO:0016529 TAS sarcoplasmic reticulum
GO:0019899 IPI enzyme binding
GO:0045822 IGI negative regulation of heart contraction
GO:0046872 IEA metal ion binding
GO:0070588 IEA calcium ion transmembrane transport

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSDART00000042040 atp2a2a-001 protein_coding Danio_rerio 0 1777
ENSDART00000146241 atp2a2a-003 protein_coding Danio_rerio 0 1773
ENSDART00000105896 atp2a1l-001 protein_coding Danio_rerio 0 1262
ENST00000308664 ATP2A2-001 protein_coding Homo_sapiens 0 4782
ENST00000313432 ATP2A2-011 retained_intron Homo_sapiens 0 765
ENST00000357084 ATP2A1-001 protein_coding Homo_sapiens 0 1435
ENST00000377685 ATP2A2-002 nonsense_mediated_decay Homo_sapiens 0 3988
ENST00000395503 ATP2A1-002 protein_coding Homo_sapiens 0 1435
ENST00000427935 RP11-265G8.3-001 processed_pseudogene Homo_sapiens 5e-25 117
ENST00000536376 ATP2A1-003 protein_coding Homo_sapiens 0 1389
ENST00000539276 ATP2A2-003 protein_coding Homo_sapiens 0 4028
ENST00000547050 ATP2A2-008 retained_intron Homo_sapiens 0 767
ENST00000547792 ATP2A2-010 retained_intron Homo_sapiens 0 372
ENST00000548169 ATP2A2-006 protein_coding Homo_sapiens 0 3110
ENST00000549840 ATP2A2-007 processed_transcript Homo_sapiens 0 411
ENST00000550248 ATP2A2-005 processed_transcript Homo_sapiens 0 322
ENST00000552636 ATP2A2-004 protein_coding Homo_sapiens 0 455
ENST00000553144 ATP2A2-012 protein_coding Homo_sapiens 1.4013e-45 185
ENST00000564732 ATP2A1-009 nonsense_mediated_decay Homo_sapiens 0 224

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