C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: up-regulated during skeletal muscle growth 5 homolog (mouse)
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000309579 USMG5-002 ENSG00000173915 9606 - 10:103389050-103396466 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000309579
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000309579 51.077±0.00 47.036±0.00 24.376±0.00 157.650±77.02 74.519±46.05 70.625±0.33 192.127±70.09 102.343±15.39 109.390±19.84 50.710±35.32 95.343±25.76 93.694±34.28 78.800±39.46 55.961±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00065U CIL_00065U_0001 CGP 10:103302796-103389065
CIL_0001HK CIL_0001HK_0002 CGP 10:103367967-103396466
CIL_00039E CIL_00039E_0002 CGP 10:103389041-103446292

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005753 ISS mitochondrial proton-transporting ATP synthase complex
GO:0016021 IEA integral component of membrane
GO:0070062 IDA extracellular vesicular exosome

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000096014 Usmg5-201 protein_coding Mus_musculus 0 344
ENSMUST00000117527 Gm14539-001 processed_pseudogene Mus_musculus 0 233
ENSMUST00000117106 Gm15151-001 processed_pseudogene Mus_musculus 0 217

Loading