C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: spectrin beta, non-erythrocytic 2
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000008991 Sptbn2-201 ENSMUSG00000067889 10090 + 19:4711208-4752353 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; BladderBrainBreastColonKidneyLiverLungOvaryPlacentaTestisENSMUST00000008991
Transcript ID Bladder Brain Breast Colon Kidney Liver Lung Ovary Placenta Testis
ENSMUST00000008991 1.248±0.00 107.819±113.64 1.748±0.25 2.623±0.73 6.336±1.16 6.646±2.01 3.755±0.64 3.820±0.00 4.856±1.51 1.445±0.00

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
GO:0001917 ISO photoreceptor inner segment
GO:0003779 IEA actin binding
GO:0005200 IEA structural constituent of cytoskeleton
GO:0005543 IEA phospholipid binding
GO:0005615 IEA extracellular space
GO:0005886 ISO plasma membrane
GO:0007416 IMP synapse assembly
GO:0016192 IEA vesicle-mediated transport
GO:0016324 IDA apical plasma membrane
GO:0021692 IMP cerebellar Purkinje cell layer morphogenesis
GO:0030534 IMP adult behavior
GO:0035264 IMP multicellular organism growth
GO:0043025 IDA neuronal cell body

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSDART00000134537 SPTBN4 (2 of 2)-001 protein_coding Danio_rerio 0 353
ENSDART00000097723 sptbn2-201 protein_coding Danio_rerio 4.00001e-40 172
ENSDART00000149151 sptbn2-001 protein_coding Danio_rerio 4.00001e-40 172
ENST00000309996 SPTBN2-201 protein_coding Homo_sapiens 0 8656
ENST00000322810 PLEC-001 protein_coding Homo_sapiens 0.000006 60
ENST00000338932 SPTBN4-201 protein_coding Homo_sapiens 0 588
ENST00000345136 PLEC-004 protein_coding Homo_sapiens 0.00002 58
ENST00000352632 SPTBN4-001 protein_coding Homo_sapiens 0 588
ENST00000354589 PLEC-005 protein_coding Homo_sapiens 0.00002 58
ENST00000354958 PLEC-008 protein_coding Homo_sapiens 0.00002 58
ENST00000356346 PLEC-009 protein_coding Homo_sapiens 0.00002 58
ENST00000357649 PLEC-006 protein_coding Homo_sapiens 0.00002 58
ENST00000392025 SPTBN4-202 protein_coding Homo_sapiens 0 588
ENST00000398774 PLEC-007 protein_coding Homo_sapiens 0.00007 57
ENST00000436759 PLEC-002 protein_coding Homo_sapiens 0.000002 62
ENST00000526416 PLEC-015 protein_coding Homo_sapiens 0.0000008 58
ENST00000527010 SPTBN2-004 protein_coding Homo_sapiens 0 521
ENST00000527096 PLEC-003 protein_coding Homo_sapiens 0.000001 62
ENST00000527816 PLEC-014 protein_coding Homo_sapiens 0.00000006 62
ENST00000528025 PLEC-010 protein_coding Homo_sapiens 0.0000002 62
ENST00000528051 SPTBN2-008 retained_intron Homo_sapiens 0 536
ENST00000528131 PLEC-013 protein_coding Homo_sapiens 0.0000008 58
ENST00000529997 SPTBN2-003 protein_coding Homo_sapiens 0 8058
ENST00000530665 SPTBN2-010 retained_intron Homo_sapiens 0 551
ENST00000530775 SPTBN2-009 retained_intron Homo_sapiens 0 320
ENST00000532346 PLEC-012 retained_intron Homo_sapiens 0.00000003 62
ENST00000532650 SPTBN2-007 retained_intron Homo_sapiens 0 444
ENST00000532902 SPTBN2-006 retained_intron Homo_sapiens 0 616
ENST00000533211 SPTBN2-001 protein_coding Homo_sapiens 0 8656
ENST00000595535 SPTBN4-003 protein_coding Homo_sapiens 0 588
ENST00000598249 SPTBN4-011 protein_coding Homo_sapiens 0 588
ENST00000611817 SPTBN2-202 protein_coding Homo_sapiens 0 2457
ENST00000617502 SPTBN2-203 protein_coding Homo_sapiens 0 2447

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