C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: glucosamine-6-phosphate deaminase 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000311337 GNPDA1-001 ENSG00000113552 9606 - 5:142000669-142013031 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000311337
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000311337 8.427±0.00 7.335±0.00 2.385±0.00 5.731±3.01 4.322±2.99 5.999±4.13 3.596±2.25 19.781±0.00 1.960±0.25 6.854±0.00 10.510±0.00 14.811±7.59 12.777±3.59 10.503±4.83

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0006Q5 CIL_0006Q5_0001 CGP 5:141958328-142013041
CIL_00062Z CIL_00062Z_0002 CGP 5:141991749-142154443

Gene Ontology

GO IDEvidence TypeGO Description
GO:0004342 IEA:IMP glucosamine-6-phosphate deaminase activity
GO:0005737 ISS cytoplasm
GO:0005975 IEA carbohydrate metabolic process
GO:0006043 IMP glucosamine catabolic process
GO:0006044 IEA N-acetylglucosamine metabolic process
GO:0006091 IMP generation of precursor metabolites and energy
GO:0007338 TAS single fertilization
GO:0016787 IEA hydrolase activity
GO:0070062 IDA extracellular vesicular exosome

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000063814 Gnpda1-001 protein_coding Mus_musculus 0 1194
ENSMUST00000025307 Gm8615-201 processed_pseudogene Mus_musculus 0 821
ENSMUST00000139885 Gnpda1-002 protein_coding Mus_musculus 0 494
ENSDART00000038301 gnpda2-201 protein_coding Danio_rerio 0 486
ENSDART00000136474 gnpda2-001 protein_coding Danio_rerio 0 486
ENSMUST00000153291 Gnpda1-003 processed_transcript Mus_musculus 0 435
ENSDART00000136665 gnpda2-002 retained_intron Danio_rerio 0 342

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