C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: sec1 family domain containing 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000311943 SCFD1-009 ENSG00000092108 9606 + 14:30622327-30735772 nonsense_mediated_decay

Homo sapiens EnsemblGRCh38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; BladderBreastColonHeartKidneyLiverLungOvaryPlacentaTestisENST00000311943
Transcript ID Bladder Breast Colon Heart Kidney Liver Lung Ovary Placenta Testis
ENST00000311943 0.762±0.00 2.806±0.00 1.740±0.00 1.940±0.43 6.056±0.00 3.891±0.00 2.796±0.19 7.798±0.19 4.134±0.00 4.274±0.68

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_000893 CIL_000893_0001 VISTA 14:30219860-30821737
CIL_0003SX CIL_0003SX_0001 CGP 14:30559123-30735812
CIL_0007KV CIL_0007KV_0002 UCNEbase 14:30606668-30894124
CIL_0003T0 CIL_0003T0_0001 CGP 14:30622112-30895065

Gene Ontology

GO IDEvidence TypeGO Description
GO:0006904 IEA vesicle docking involved in exocytosis
GO:0016192 IEA vesicle-mediated transport

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000021335 Scfd1-201 protein_coding Mus_musculus 0 1890

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