C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: SH2 domain containing 3C
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000314830 SH2D3C-004 ENSG00000095370 9606 - 9:127738319-127778741 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderLiverOvaryPlacentaENST00000314830
Transcript ID Adipose Adrenal Bladder Liver Ovary Placenta
ENST00000314830 4.067±0.00 5.566±0.00 0.062±0.00 0.189±0.00 1.288±0.28 2.203±1.19

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008YA CIL_0008YA_0001 VISTA 9:127227593-127829012
CIL_0002CG CIL_0002CG_0002 CGP 9:127731524-127778741

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005070 TAS SH3/SH2 adaptor activity
GO:0005085 IEA guanyl-nucleotide exchange factor activity
GO:0005515 IPI protein binding
GO:0005737 IEA cytoplasm
GO:0007254 TAS JNK cascade
GO:0007264 IEA small GTPase mediated signal transduction
GO:0009967 TAS positive regulation of signal transduction
GO:0016020 IEA membrane
GO:0043547 IEA positive regulation of GTPase activity

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000074248 Sh2d3c-001 protein_coding Mus_musculus 0 2950
ENSMUST00000113242 Sh2d3c-002 protein_coding Mus_musculus 0 2700
ENSMUST00000131101 Sh2d3c-003 protein_coding Mus_musculus 0 754
ENSDART00000029457 sh2d3ca-201 protein_coding Danio_rerio 0 316
ENSDART00000144214 sh2d3ca-001 protein_coding Danio_rerio 0 316
ENSMUST00000124133 Sh2d3c-004 processed_transcript Mus_musculus 5e-30 137

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