C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: transcription factor binding to IGHM enhancer 3
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000315869 TFE3-001 ENSG00000068323 9606 - X:49028731-49043486 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000315869
Transcript ID Adipose Adrenal Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000315869 14.406±0.00 5.199±0.00 7.270±4.35 11.051±0.00 6.047±4.87 2.922±2.25 6.827±0.00 2.769±0.23 11.658±10.60 3.319±1.38 10.437±12.15 9.138±0.58 4.998±0.00

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003677 IEA DNA binding
GO:0003700 ISS sequence-specific DNA binding transcription factor activity
GO:0005634 IDA nucleus
GO:0005737 IDA cytoplasm
GO:0006351 IEA transcription, DNA-templated
GO:0006355 IEA regulation of transcription, DNA-templated
GO:0006959 ISS humoral immune response
GO:0044212 ISS transcription regulatory region DNA binding
GO:0045670 IEA regulation of osteoclast differentiation
GO:0045785 IMP positive regulation of cell adhesion
GO:0045893 IEA positive regulation of transcription, DNA-templated
GO:0045944 ISS positive regulation of transcription from RNA polymerase II promoter
GO:0046983 IEA protein dimerization activity

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000077680 Tfe3-003 protein_coding Mus_musculus 0 2555
ENSMUST00000115679 Tfe3-005 protein_coding Mus_musculus 0 2442
ENSMUST00000115677 Tfe3-002 protein_coding Mus_musculus 0 2076
ENSMUST00000137467 Tfe3-006 protein_coding Mus_musculus 0 2076
ENSMUST00000101695 Tfe3-008 protein_coding Mus_musculus 0 2074
ENSMUST00000115680 Tfe3-010 nonsense_mediated_decay Mus_musculus 0 1821
ENSMUST00000079542 Tfe3-004 protein_coding Mus_musculus 0 1315
ENSMUST00000126694 Tfe3-009 retained_intron Mus_musculus 0 1131
ENSMUST00000115678 Tfe3-001 protein_coding Mus_musculus 0 1085
ENSMUST00000143680 Tfe3-007 retained_intron Mus_musculus 0 1026
ENSMUST00000144900 Tfe3-013 protein_coding Mus_musculus 0 462
ENSMUST00000132209 Tfe3-012 processed_transcript Mus_musculus 0 438
ENSMUST00000146782 Tfeb-009 protein_coding Mus_musculus 2e-40 172
ENSMUST00000024786 Tfeb-001 protein_coding Mus_musculus 2e-40 172
ENSMUST00000113288 Tfeb-003 protein_coding Mus_musculus 2e-40 172
ENSMUST00000086932 Tfeb-002 protein_coding Mus_musculus 2e-40 172
ENSMUST00000144715 Tfe3-011 retained_intron Mus_musculus 1e-36 159
ENSMUST00000124765 Tfeb-008 processed_transcript Mus_musculus 1e-36 159
ENSMUST00000113284 Tfeb-011 protein_coding Mus_musculus 5e-16 92
ENSMUST00000162719 Tfeb-015 retained_intron Mus_musculus 0.000000008 68

Loading