C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: transcription factor EB
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000024786 Tfeb-001 ENSMUSG00000023990 10090 + 17:47785720-47792415 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; PlacentaTestisENSMUST00000024786
Transcript ID Placenta Testis
ENSMUST00000024786 15.591±9.18 0.459±0.21

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_000963 CIL_000963_0002 VISTA 17:47571879-48173076
CIL_00093V CIL_00093V_0002 VISTA 17:47614773-48215356
CIL_0008XI CIL_0008XI_0002 VISTA 17:47688296-48291797
CIL_0008IB CIL_0008IB_0002 VISTA 17:47708185-48309224
CIL_0007QG CIL_0007QG_0002 VISTA 17:47710565-48311720

Gene Ontology

GO IDEvidence TypeGO Description
GO:0001892 IMP embryonic placenta development
GO:0003677 IDA DNA binding
GO:0003700 IDA sequence-specific DNA binding transcription factor activity
GO:0005634 ISS nucleus
GO:0005667 IDA transcription factor complex
GO:0005737 ISS cytoplasm
GO:0006351 IEA transcription, DNA-templated
GO:0006914 IEA autophagy
GO:0006959 IEA:IMP humoral immune response
GO:0007040 ISS lysosome organization
GO:0010508 ISS positive regulation of autophagy
GO:0044212 IDA transcription regulatory region DNA binding
GO:0045893 IDA positive regulation of transcription, DNA-templated
GO:0045944 IDA positive regulation of transcription from RNA polymerase II promoter
GO:0046982 IPI protein heterodimerization activity
GO:0046983 IEA protein dimerization activity

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000230323 TFEB-001 protein_coding Homo_sapiens 0 1906
ENST00000315869 TFE3-001 protein_coding Homo_sapiens 2e-40 172
ENST00000343317 TFEB-015 protein_coding Homo_sapiens 0 1908
ENST00000358871 TFEB-010 protein_coding Homo_sapiens 0 1903
ENST00000373033 TFEB-005 protein_coding Homo_sapiens 0 1905
ENST00000394283 TFEB-004 protein_coding Homo_sapiens 0 1040
ENST00000403298 TFEB-201 protein_coding Homo_sapiens 0 1903
ENST00000406563 TFEB-003 protein_coding Homo_sapiens 0 1336
ENST00000416140 TFEB-008 protein_coding Homo_sapiens 0 937
ENST00000419396 TFEB-006 protein_coding Homo_sapiens 0 1035
ENST00000419574 TFEB-002 protein_coding Homo_sapiens 0 832
ENST00000420312 TFEB-202 protein_coding Homo_sapiens 0 1336
ENST00000424495 TFEB-014 protein_coding Homo_sapiens 0 326
ENST00000425401 TFEB-011 protein_coding Homo_sapiens 1e-37 159
ENST00000445214 TFEB-009 protein_coding Homo_sapiens 0 285
ENST00000487451 TFE3-006 processed_transcript Homo_sapiens 4.99997e-41 172
ENST00000493583 TFE3-004 nonsense_mediated_decay Homo_sapiens 2e-40 172
ENST00000494822 TFEB-007 retained_intron Homo_sapiens 0 207

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