C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: fibrillin 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000316623 FBN1-001 ENSG00000166147 9606 - 15:48408306-48645849 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000316623
Transcript ID Adipose Adrenal Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000316623 4.087±0.00 2.604±0.00 0.348±0.06 10.446±2.84 5.111±0.81 1.985±0.00 1.726±0.22 13.940±13.56 3.194±0.00 1.247±0.00 5.079±2.31 27.678±17.66 8.656±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008GC CIL_0008GC_0001 VISTA 15:48330070-48933845
CIL_0004NG CIL_0004NG_0001 CGP 15:48331011-48645849

Gene Ontology

GO IDEvidence TypeGO Description
GO:0001501 IMP skeletal system development
GO:0001527 IDA microfibril
GO:0001656 IEA metanephros development
GO:0001822 IEA kidney development
GO:0005201 IDA:IEA extracellular matrix structural constituent
GO:0005509 IEA:IDA calcium ion binding
GO:0005515 IPI:IEA protein binding
GO:0005576 TAS extracellular region
GO:0005578 IEA:IDA proteinaceous extracellular matrix
GO:0005604 IDA basement membrane
GO:0005615 IDA extracellular space
GO:0007507 IMP heart development
GO:0022617 TAS extracellular matrix disassembly
GO:0030198 TAS extracellular matrix organization
GO:0031012 IDA extracellular matrix
GO:0035582 ISS sequestering of BMP in extracellular matrix
GO:0035583 ISS sequestering of TGFbeta in extracellular matrix
GO:0070062 IDA extracellular vesicular exosome
GO:0071560 IEA cellular response to transforming growth factor beta stimulus

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000028633 Fbn1-001 protein_coding Mus_musculus 0 11380
ENSMUST00000103234 Fbn1-003 protein_coding Mus_musculus 0 11350
ENSMUST00000148272 Fbn1-002 retained_intron Mus_musculus 0 1759
ENSMUST00000025497 Fbn2-201 protein_coding Mus_musculus 0 593
ENSDART00000073604 fbn2a-201 protein_coding Danio_rerio 0 355
ENSMUST00000066157 Gm9913-201 protein_coding Mus_musculus 0 207
ENSDART00000149104 fbn2a-001 protein_coding Danio_rerio 0 207

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