C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0006SH_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSDARG00000043220-ENSDARG00000020250 CGP 7955 20:20037014-20294379
GeneTranscriptPositionBiotype
ENSDARG00000020250 (rhoj)
ras homolog gene family, member J 		ENSDART00000002507 (rhoj-001) 20258866-20294379 protein_coding
ENSDARG00000043220 (kcnh5a)
potassium voltage-gated channel, subfamily H (eag-related), member 5a 		ENSDART00000029689 (kcnh5a-201) 20037083-20255031 protein_coding
ENSDART00000103532 (kcnh5a-001) 20037014-20255031 protein_coding
ENSDART00000131859 (kcnh5a-002) 20165383-20184094 protein_coding
ENSDARG00000094102 (si:dkey-100h21.2)
si:dkey-100h21.2 		ENSDART00000132620 (si:dkey-100h21.2-003) 20103594-20107143 antisense
ENSDART00000152468 (si:dkey-100h21.2-002) 20103136-20104671 antisense
ENSDART00000152783 (si:dkey-100h21.2-001) 20103128-20107537 antisense
CIL_0006SH_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000140015-ENSG00000126785 CGP 9606 14:62699454-63293219
GeneTranscriptPositionBiotype
ENSG00000126785 (RHOJ)
ras homolog family member J 		ENST00000316754 (RHOJ-001) 63204408-63293219 protein_coding
ENST00000555125 (RHOJ-005) 63204859-63283255 protein_coding
ENST00000557133 (RHOJ-004) 63204685-63269326 processed_transcript
ENST00000557447 (RHOJ-003) 63204114-63293219 nonsense_mediated_decay
ENSG00000140015 (KCNH5)
potassium voltage-gated channel, subfamily H (eag-related), member 5 		ENST00000322893 (KCNH5-004) 62699454-63045455 protein_coding
ENST00000394964 (KCNH5-002) 62949818-63102037 retained_intron
ENST00000394968 (KCNH5-003) 62712240-63101866 protein_coding
ENST00000420622 (KCNH5-005) 62707567-63045186 protein_coding
ENSG00000258995 (RP11-1112J20.1)
 ENST00000556806 (RP11-1112J20.1-001) 63123007-63123201 processed_pseudogene
ENSG00000259093 (RP11-1112J20.2)
 ENST00000554921 (RP11-1112J20.2-001) 63123033-63128214 lincRNA
ENSG00000265711 (AL049871.1)
 ENST00000578959 (AL049871.1-201) 63232715-63232812 miRNA
CIL_0006SH_0003 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000034402-ENSMUSG00000046768 CGP 10090 12:74897217-75401456
GeneTranscriptPositionBiotype
ENSMUSG00000034402 (Kcnh5)
potassium voltage-gated channel, subfamily H (eag-related), member 5 		ENSMUST00000042299 (Kcnh5-201) 74897217-75177332 protein_coding
ENSMUSG00000046768 (Rhoj)
ras homolog gene family, member J 		ENSMUST00000055390 (Rhoj-001) 75308322-75401456 protein_coding
ENSMUST00000118602 (Rhoj-003) 75308322-75395817 protein_coding
ENSMUST00000118966 (Rhoj-002) 75308322-75397956 protein_coding
ENSMUST00000146096 (Rhoj-004) 75308673-75375648 retained_intron
ENSMUST00000172981 (Rhoj-005) 75308881-75400212 nonsense_mediated_decay

Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0006SH_0001ENSDARG00000020250ENSDART00000002507ENSDARG00000043220ENSDART00000029689ENSDART00000103532ENSDART00000131859ENSDARG00000094102ENSDART00000132620ENSDART00000152468ENSDART00000152783CIL_0006SH_0002ENSG00000126785ENST00000316754ENST00000555125ENST00000557133ENST00000557447ENSG00000140015ENST00000322893ENST00000394964ENST00000394968ENST00000420622ENSG00000258995ENST00000556806ENSG00000259093ENST00000554921ENSG00000265711ENST00000578959CIL_0006SH_0003ENSMUSG00000034402ENSMUST00000042299ENSMUSG00000046768ENSMUST00000055390ENSMUST00000118602ENSMUST00000118966ENSMUST00000146096ENSMUST00000172981
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0006SH_0001ENSDARG00000020250ENSDART00000002507ENSDARG00000043220ENSDART00000029689ENSDART00000103532ENSDARG00000094102ENSDART00000132620ENSDART00000152468ENSDART00000152783CIL_0006SH_0002ENSG00000126785ENST00000316754ENST00000555125ENST00000557133ENST00000557447ENSG00000140015ENST00000322893ENST00000394964ENST00000394968ENST00000420622ENSG00000258995ENST00000556806ENSG00000259093ENST00000554921ENSG00000265711ENST00000578959CIL_0006SH_0003ENSMUSG00000034402ENSMUST00000042299ENSMUSG00000046768ENSMUST00000055390ENSMUST00000118602ENSMUST00000118966ENSMUST00000146096ENSMUST00000172981
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSDARG00000020250 ENSDART00000002507 N/A N/A N/A 0.836±0.47 N/A N/A 1.746±0.91 0.371±0.00 0.021±0.00 N/A 0.468±0.00 N/A N/A N/A
ENSDARG00000043220 ENSDART00000029689 N/A N/A N/A 0.040±0.00 N/A N/A 0.074±0.05 N/A N/A N/A N/A N/A N/A N/A
ENSDART00000103532 N/A N/A N/A N/A N/A N/A N/A 0.048±0.00 0.011±0.00 N/A 0.033±0.00 N/A N/A N/A
ENSDART00000131859 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSDARG00000094102 ENSDART00000132620 N/A N/A N/A N/A N/A N/A 0.131±0.00 0.070±0.00 N/A N/A N/A N/A N/A N/A
ENSDART00000152468 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.261±0.00 N/A N/A N/A
ENSDART00000152783 N/A N/A N/A 0.139±0.09 N/A N/A N/A 0.104±0.00 N/A N/A N/A N/A N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000126785 ENST00000316754 5.017±0.00 9.366±0.00 0.185±0.00 1.794±0.00 4.468±0.00 4.418±4.06 1.971±1.39 1.354±0.83 0.930±0.38 5.433±4.65 1.540±0.00 2.974±2.49 3.361±1.47 3.349±2.53
ENST00000555125 N/A N/A N/A N/A N/A N/A 0.606±0.00 N/A N/A 23.962±0.00 0.132±0.00 1.469±0.00 2.393±0.00 0.898±0.00
ENST00000557133 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 2.964±0.00 N/A N/A N/A
ENST00000557447 N/A N/A N/A N/A 0.441±0.00 N/A N/A N/A N/A N/A 0.166±0.00 N/A N/A N/A
ENSG00000140015 ENST00000322893 0.004±0.00 N/A N/A 1.770±1.19 0.002±0.00 0.016±0.00 0.007±0.00 N/A N/A 0.005±0.00 0.003±0.00 0.002±0.00 0.023±0.01 N/A
ENST00000394964 N/A 0.030±0.00 N/A N/A 0.006±0.00 N/A 0.011±0.01 N/A N/A 0.019±0.00 N/A 0.015±0.00 0.068±0.00 0.127±0.00
ENST00000394968 N/A N/A 0.087±0.00 N/A N/A N/A N/A N/A N/A N/A N/A 0.033±0.00 N/A 0.141±0.00
ENST00000420622 N/A N/A N/A N/A N/A 0.029±0.00 N/A N/A N/A N/A N/A N/A 0.047±0.02 0.097±0.01
ENSG00000258995 ENST00000556806 N/A N/A N/A N/A 0.124±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000259093 ENST00000554921 N/A N/A N/A 0.018±0.00 0.033±0.00 N/A 0.015±0.00 N/A N/A 0.098±0.00 0.014±0.00 N/A 0.074±0.03 0.149±0.05
ENSG00000265711 ENST00000578959 N/A N/A N/A 1.659±0.00 N/A N/A 0.304±0.00 N/A 1.245±0.00 0.346±0.00 N/A N/A N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000034402 ENSMUST00000042299 0.188±0.18 0.014±0.00 0.009±0.00 0.566±0.53 0.033±0.01 0.016±0.00 N/A 0.069±0.03 0.003±0.00 N/A 0.013±0.00 0.120±0.12 0.005±0.00 0.152±0.07
ENSMUSG00000046768 ENSMUST00000055390 34.649±9.02 11.783±2.30 54.971±0.34 3.330±2.47 30.230±3.64 20.740±1.91 15.606±1.39 8.433±0.59 2.518±0.92 49.970±4.26 3.974±0.63 38.177±15.61 4.025±2.56 1.018±0.55
ENSMUST00000118602 N/A N/A N/A 0.060±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000118966 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.291±0.02 1.023±0.12 N/A N/A
ENSMUST00000146096 N/A 12.163±3.48 N/A N/A N/A 15.478±0.00 N/A N/A N/A N/A N/A 36.917±6.24 3.274±0.00 N/A
ENSMUST00000172981 58.340±15.37 12.315±0.42 N/A 1.215±0.00 43.577±7.18 27.162±1.88 25.788±0.53 12.276±0.82 2.087±0.23 70.526±7.42 N/A 56.581±7.63 4.205±0.00 1.392±0.63

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