C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: lysine (K)-specific demethylase 5C
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000112588 Kdm5c-001 ENSMUSG00000025332 10090 + X:152233229-152274535 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000112588
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000112588 6.806±2.03 3.588±0.48 7.586±0.38 8.431±4.69 6.121±1.53 5.453±2.17 3.308±0.71 5.596±1.02 4.806±1.71 6.863±0.71 1.604±0.32 8.272±1.30 8.540±2.20 1.253±0.71

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00062O CIL_00062O_0002 CGP X:152144268-152274535

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003677 IEA DNA binding
GO:0005634 IEA nucleus
GO:0006351 IEA transcription, DNA-templated
GO:0008270 IEA zinc ion binding
GO:0016706 IEA oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors
GO:0032453 IEA histone demethylase activity (H3-K4 specific)
GO:0034720 IEA histone H3-K4 demethylation
GO:0042752 NAS regulation of circadian rhythm
GO:0045892 IDA negative regulation of transcription, DNA-templated
GO:0055114 IEA oxidation-reduction process

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000235790 KDM5B-002 protein_coding Homo_sapiens 0 420
ENST00000317961 KDM5D-001 protein_coding Homo_sapiens 0 3247
ENST00000349663 KDM5C-011 nonsense_mediated_decay Homo_sapiens 0 446
ENST00000367264 KDM5B-003 protein_coding Homo_sapiens 0 420
ENST00000367265 KDM5B-001 protein_coding Homo_sapiens 0 420
ENST00000375379 KDM5C-006 protein_coding Homo_sapiens 0 6324
ENST00000375383 KDM5C-007 protein_coding Homo_sapiens 0 5531
ENST00000375401 KDM5C-005 protein_coding Homo_sapiens 0 6920
ENST00000382806 KDM5D-002 protein_coding Homo_sapiens 0 3247
ENST00000404049 KDM5C-009 protein_coding Homo_sapiens 0 6754
ENST00000415360 KDM5D-009 protein_coding Homo_sapiens 0 726
ENST00000428012 KDM5C-013 nonsense_mediated_decay Homo_sapiens 0 555
ENST00000429877 KDM5C-012 nonsense_mediated_decay Homo_sapiens 0 531
ENST00000440077 KDM5D-004 protein_coding Homo_sapiens 0 3247
ENST00000447300 KDM5D-003 protein_coding Homo_sapiens 0 459
ENST00000452825 KDM5C-201 protein_coding Homo_sapiens 0 5059
ENST00000456180 KDM5B-007 processed_transcript Homo_sapiens 0 254
ENST00000465402 KDM5C-004 processed_transcript Homo_sapiens 0 608
ENST00000467093 KDM5C-003 processed_transcript Homo_sapiens 0 460
ENST00000469599 KDM5D-006 retained_intron Homo_sapiens 0 1345
ENST00000477109 KDM5C-001 processed_transcript Homo_sapiens 0 243
ENST00000478891 KDM5D-008 retained_intron Homo_sapiens 0 472
ENST00000481369 KDM5C-010 retained_intron Homo_sapiens 0 427
ENST00000492117 KDM5D-005 retained_intron Homo_sapiens 0 1877
ENST00000495519 KDM5C-002 processed_transcript Homo_sapiens 0 381
ENST00000497100 KDM5C-008 retained_intron Homo_sapiens 0 1539
ENST00000497995 KDM5C-014 retained_intron Homo_sapiens 0 401
ENST00000541639 KDM5D-201 protein_coding Homo_sapiens 0 2852
ENST00000623344 KDM5D-202 protein_coding Homo_sapiens 0 3247
ENST00000623754 AC010889.1-201 protein_coding Homo_sapiens 0 3247
ENST00000624262 AC010889.2-201 protein_coding Homo_sapiens 0 2852

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