C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: PDZ and LIM domain 5
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000317968 PDLIM5-001 ENSG00000163110 9606 + 4:94451902-94668223 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBladderBrainBreastColonKidneyLiverLungOvaryPlacentaENST00000317968
Transcript ID Adipose Bladder Brain Breast Colon Kidney Liver Lung Ovary Placenta
ENST00000317968 4.342±0.00 6.766±0.00 2.015±0.22 6.863±1.42 7.347±2.07 18.018±0.00 10.629±0.00 9.605±3.66 6.671±3.92 11.166±2.35

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00091X CIL_00091X_0001 VISTA 4:94368294-94970308
CIL_0001S9 CIL_0001S9_0002 CGP 4:94451857-95158448

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003779 ISS actin binding
GO:0005080 ISS protein kinase C binding
GO:0005515 IEA protein binding
GO:0005829 ISS cytosol
GO:0008270 IEA zinc ion binding
GO:0014069 ISS postsynaptic density
GO:0015629 IDA actin cytoskeleton
GO:0016020 ISS membrane
GO:0030054 IEA cell junction
GO:0042805 ISS actinin binding
GO:0043005 IEA neuron projection
GO:0045211 IEA postsynaptic membrane
GO:0051963 ISS regulation of synapse assembly
GO:0061001 ISS regulation of dendritic spine morphogenesis

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000029941 Pdlim5-201 protein_coding Mus_musculus 0 2172
ENSMUST00000168967 Pdlim5-204 protein_coding Mus_musculus 0 1223
ENSMUST00000058626 Pdlim5-202 protein_coding Mus_musculus 0 405
ENSMUST00000090134 Pdlim5-203 protein_coding Mus_musculus 0 405
ENSMUST00000170361 Pdlim5-205 protein_coding Mus_musculus 0 359

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