C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: PDZ and LIM domain 5
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000029941 Pdlim5-201 ENSMUSG00000028273 10090 - 3:142239586-142395696 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungOvaryPlacentaTestisENSMUST00000029941
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Ovary Placenta Testis
ENSMUST00000029941 14.999±0.74 15.525±1.56 18.419±2.32 2.612±0.98 16.330±2.98 17.222±1.04 8.635±0.31 19.455±1.19 11.528±3.92 18.929±1.68 12.768±2.63 18.630±5.51 2.424±1.15

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00091X CIL_00091X_0002 VISTA 3:141937411-142539503

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003779 IEA actin binding
GO:0005080 IEA protein kinase C binding
GO:0005515 IPI protein binding
GO:0005829 ISS cytosol
GO:0008270 IEA zinc ion binding
GO:0014069 ISS postsynaptic density
GO:0015629 IEA actin cytoskeleton
GO:0016020 IEA membrane
GO:0030018 IDA Z disc
GO:0030054 IEA cell junction
GO:0042805 IEA actinin binding
GO:0043005 IEA neuron projection
GO:0045211 IEA postsynaptic membrane
GO:0047485 IEA protein N-terminus binding
GO:0051963 ISS regulation of synapse assembly
GO:0061001 ISS regulation of dendritic spine morphogenesis

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000317968 PDLIM5-001 protein_coding Homo_sapiens 0 2172
ENST00000318007 PDLIM5-201 protein_coding Homo_sapiens 0 418
ENST00000359265 PDLIM5-004 protein_coding Homo_sapiens 0 219
ENST00000380176 PDLIM5-009 processed_transcript Homo_sapiens 0 1205
ENST00000380180 PDLIM5-202 protein_coding Homo_sapiens 0 418
ENST00000437932 PDLIM5-203 protein_coding Homo_sapiens 0 1205
ENST00000503974 PDLIM5-005 protein_coding Homo_sapiens 0 1002
ENST00000504489 PDLIM5-003 protein_coding Homo_sapiens 1.4013e-45 187
ENST00000508216 PDLIM5-008 protein_coding Homo_sapiens 0 359
ENST00000508531 PDLIM5-006 processed_transcript Homo_sapiens 3e-35 152
ENST00000509333 PDLIM5-014 retained_intron Homo_sapiens 0 401
ENST00000509357 PDLIM5-015 nonsense_mediated_decay Homo_sapiens 0 291
ENST00000510099 PDLIM5-013 processed_transcript Homo_sapiens 0 608
ENST00000511586 PDLIM5-007 processed_transcript Homo_sapiens 0 318
ENST00000511767 PDLIM5-018 processed_transcript Homo_sapiens 0 324
ENST00000512274 PDLIM5-002 protein_coding Homo_sapiens 0 202
ENST00000513341 PDLIM5-016 protein_coding Homo_sapiens 0 407
ENST00000514743 PDLIM5-010 protein_coding Homo_sapiens 0 957
ENST00000514830 PDLIM5-017 processed_transcript Homo_sapiens 0 405
ENST00000542407 PDLIM5-204 protein_coding Homo_sapiens 0 1796
ENST00000615540 PDLIM5-205 protein_coding Homo_sapiens 0 957

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