C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: PDZ and LIM domain 5
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000163110 PDLIM5 9606 + 4:94451857-94668227 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000317968 PDLIM5-001 94451902-94668223 protein_coding
  ENST00000318007 PDLIM5-201 94451857-94588216 protein_coding
  ENST00000359265 PDLIM5-004 94451886-94457184 protein_coding
  ENST00000380176 PDLIM5-009 94584401-94665481 processed_transcript
  ENST00000380180 PDLIM5-202 94451857-94588216 protein_coding
  ENST00000437932 PDLIM5-203 94451857-94668227 protein_coding
  ENST00000503974 PDLIM5-005 94451935-94666552 protein_coding
  ENST00000504489 PDLIM5-003 94451942-94456164 protein_coding
  ENST00000506632 PDLIM5-012 94585627-94657547 nonsense_mediated_decay
  ENST00000508216 PDLIM5-008 94455245-94588127 protein_coding
  ENST00000508531 PDLIM5-006 94523831-94582999 processed_transcript
  ENST00000509333 PDLIM5-014 94451928-94573735 retained_intron
  ENST00000509357 PDLIM5-015 94523724-94618152 nonsense_mediated_decay
  ENST00000510099 PDLIM5-013 94489035-94575938 processed_transcript
  ENST00000511586 PDLIM5-007 94579221-94618191 processed_transcript
  ENST00000511767 PDLIM5-018 94455267-94549986 processed_transcript
  ENST00000512274 PDLIM5-002 94451920-94455542 protein_coding
  ENST00000513341 PDLIM5-016 94523725-94587286 protein_coding
  ENST00000514743 PDLIM5-010 94455245-94665501 protein_coding
  ENST00000514830 PDLIM5-017 94451908-94582835 processed_transcript
  ENST00000542407 PDLIM5-204 94451857-94668227 protein_coding
  ENST00000615540 PDLIM5-205 94451857-94668227 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000317968ENST00000318007ENST00000437932ENST00000503974ENST00000508216ENST00000542407ENST00000615540
Transcript ID Adipose Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000317968 4.342±0.00 6.766±0.00 2.015±0.22 6.863±1.42 7.347±2.07 N/A 18.018±0.00 10.629±0.00 9.605±3.66 N/A 6.671±3.92 11.166±2.35 N/A
ENST00000318007 N/A N/A N/A 6.197±0.00 N/A N/A N/A N/A N/A 53.255±1.75 N/A N/A N/A
ENST00000437932 2.570±0.00 N/A N/A 1.982±0.00 N/A N/A 7.049±0.00 N/A N/A N/A N/A 3.317±0.00 9.194±0.00
ENST00000503974 7.921±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A 5.959±0.00 5.588±0.00 4.310±0.00
ENST00000508216 N/A N/A N/A 5.184±0.00 N/A 110.335±35.50 N/A N/A 5.241±0.00 58.163±28.59 N/A N/A N/A
ENST00000542407 N/A N/A 3.818±0.00 N/A N/A N/A 8.021±0.00 6.976±0.00 N/A N/A 6.735±0.00 5.776±0.00 3.355±0.16
ENST00000615540 N/A N/A N/A N/A N/A 30.109±15.04 N/A N/A N/A N/A N/A N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00091X CIL_00091X_0001 VISTA 4:94368294-94970308
CIL_0001S9 CIL_0001S9_0002 CGP 4:94451857-95158448

Gene Ontology
GO IDEvidence TypeGO Description
GO:0003779 ISS actin binding
GO:0005080 ISS protein kinase C binding
GO:0005515 IEA protein binding
GO:0005829 ISS cytosol
GO:0008270 IEA zinc ion binding
GO:0014069 ISS postsynaptic density
GO:0015629 IDA actin cytoskeleton
GO:0016020 ISS membrane
GO:0030018 IEA Z disc
GO:0030054 IEA cell junction
GO:0042805 ISS actinin binding
GO:0043005 IEA neuron projection
GO:0045211 IEA postsynaptic membrane
GO:0047485 IEA protein N-terminus binding
GO:0051963 ISS regulation of synapse assembly
GO:0061001 ISS regulation of dendritic spine morphogenesis

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000027600 pdlim5b PDZ and LIM domain 5b protein_coding Danio_rerio
ENSDARG00000038267 pdlim5a PDZ and LIM domain 5a protein_coding Danio_rerio
ENSMUSG00000028273 Pdlim5 PDZ and LIM domain 5 protein_coding Mus_musculus

Loading