C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: LIM and SH3 protein 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000318008 LASP1-001 ENSG00000002834 9606 + 17:38869859-38921770 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000318008
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000318008 14.304±0.00 47.946±0.00 2.033±0.00 15.104±11.75 19.065±10.34 9.404±0.00 3.111±1.49 6.797±5.30 6.090±2.51 11.362±9.10 2.976±1.84 45.837±23.75 49.615±8.56 18.142±14.18

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0006QO CIL_0006QO_0001 CGP 17:38847865-38921770

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005070 TAS SH3/SH2 adaptor activity
GO:0005515 IPI:IEA protein binding
GO:0005737 IEA cytoplasm
GO:0005925 IDA focal adhesion
GO:0006811 ISS ion transport
GO:0008270 IEA zinc ion binding
GO:0009967 TAS positive regulation of signal transduction
GO:0015075 ISS ion transmembrane transporter activity
GO:0030864 ISS cortical actin cytoskeleton
GO:0034220 IEA ion transmembrane transport
GO:0051015 IEA actin filament binding
GO:0070062 IDA extracellular vesicular exosome

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000043843 Lasp1-001 protein_coding Mus_musculus 0 1389
ENSMUST00000118257 Gm4875-001 processed_pseudogene Mus_musculus 0 965
ENSMUST00000148280 Lasp1-011 protein_coding Mus_musculus 0 745
ENSMUST00000129828 Lasp1-010 protein_coding Mus_musculus 0 532
ENSMUST00000152962 Lasp1-006 protein_coding Mus_musculus 0 479
ENSMUST00000129558 Lasp1-005 protein_coding Mus_musculus 0 479
ENSMUST00000127575 Lasp1-014 retained_intron Mus_musculus 0 459
ENSMUST00000146572 Lasp1-007 protein_coding Mus_musculus 0 440
ENSMUST00000107569 Lasp1-017 retained_intron Mus_musculus 0 318
ENSDART00000051807 lasp1-001 protein_coding Danio_rerio 0 303
ENSMUST00000155762 Lasp1-013 protein_coding Mus_musculus 0 283
ENSDART00000064838 lasp1-002 protein_coding Danio_rerio 0 268
ENSMUST00000107568 Lasp1-015 retained_intron Mus_musculus 0 267
ENSMUST00000143571 Lasp1-004 protein_coding Mus_musculus 0 259
ENSDART00000140376 lasp1-003 processed_transcript Danio_rerio 0 206

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