C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: LIM and SH3 protein 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000043843 Lasp1-001 ENSMUSG00000038366 10090 + 11:97799565-97838764 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000043843
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000043843 61.218±11.41 64.682±4.68 44.587±1.69 36.047±4.11 65.302±18.13 114.060±3.28 11.421±0.77 43.554±2.01 28.307±9.62 52.947±7.28 4.475±0.98 41.107±15.02 109.028±40.02 8.636±3.45

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0006QO CIL_0006QO_0002 CGP 11:97777527-97838764

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005515 IPI protein binding
GO:0005737 IDA cytoplasm
GO:0005925 IDA focal adhesion
GO:0006811 ISS ion transport
GO:0008270 IEA zinc ion binding
GO:0015075 ISS ion transmembrane transporter activity
GO:0030864 ISS cortical actin cytoskeleton
GO:0034220 IEA ion transmembrane transport
GO:0051015 IDA actin filament binding
GO:0070062 IEA extracellular vesicular exosome

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000318008 LASP1-001 protein_coding Homo_sapiens 0 1389
ENST00000419929 LASP1-002 protein_coding Homo_sapiens 0 678
ENST00000433206 LASP1-201 protein_coding Homo_sapiens 0 822
ENST00000435347 LASP1-202 protein_coding Homo_sapiens 0 1223
ENST00000443937 LASP1-005 nonsense_mediated_decay Homo_sapiens 0 826
ENST00000581485 LASP1-009 retained_intron Homo_sapiens 0 527
ENST00000584106 LASP1-004 retained_intron Homo_sapiens 0 601
ENST00000585841 LASP1-003 nonsense_mediated_decay Homo_sapiens 0 822

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