C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: Usher syndrome 1C (autosomal recessive, severe)
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000318024 USH1C-001 ENSG00000006611 9606 - 11:17493895-17544416 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdrenalBrainBreastColonKidneyOvaryTestisENST00000318024
Transcript ID Adrenal Brain Breast Colon Kidney Ovary Testis
ENST00000318024 0.714±0.00 3.328±2.47 0.684±0.00 2.528±0.63 12.746±0.00 8.488±11.23 0.823±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0003ZZ CIL_0003ZZ_0001 CGP 11:17392885-17544416
CIL_0003ZY CIL_0003ZY_0001 CGP 11:17493895-17647150

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000086 IMP G2/M transition of mitotic cell cycle
GO:0005515 IPI:IEA protein binding
GO:0005737 IDA cytoplasm
GO:0005856 IEA cytoskeleton
GO:0007605 IMP sensory perception of sound
GO:0030507 IDA spectrin binding
GO:0032420 TAS stereocilium
GO:0045177 IDA apical part of cell
GO:0045494 IMP photoreceptor cell maintenance
GO:0050953 IMP sensory perception of light stimulus
GO:0050957 IMP equilibrioception

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000078680 Ush1c-004 protein_coding Mus_musculus 0 1991
ENSMUST00000176371 Ush1c-008 protein_coding Mus_musculus 0 1940
ENSMUST00000009667 Ush1c-001 protein_coding Mus_musculus 0 1509
ENSMUST00000143155 Ush1c-002 nonsense_mediated_decay Mus_musculus 0 1509
ENSMUST00000154292 Ush1c-003 protein_coding Mus_musculus 0 1498
ENSMUST00000177212 Ush1c-007 protein_coding Mus_musculus 0 1022

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