C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: retinitis pigmentosa GTPase regulator
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000318842 RPGR-001 ENSG00000156313 9606 - X:38269163-38327564 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBreastHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000318842
Transcript ID Adipose Adrenal Breast Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000318842 4.486±0.00 2.220±0.00 0.602±0.00 0.156±0.00 0.504±0.00 0.269±0.01 0.759±0.00 0.646±0.00 1.296±0.50 0.544±0.31 6.279±3.51

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0005YZ CIL_0005YZ_0001 CGP X:38149336-38327564
CIL_0005YY CIL_0005YY_0001 CGP X:38269163-38421450

Gene Ontology

GO IDEvidence TypeGO Description
GO:0001750 IDA photoreceptor outer segment
GO:0005085 IEA guanyl-nucleotide exchange factor activity
GO:0005515 IPI protein binding
GO:0005794 ISS Golgi apparatus
GO:0005813 IDA centrosome
GO:0006886 TAS intracellular protein transport
GO:0007601 IMP visual perception
GO:0036064 ISS ciliary basal body
GO:0036126 ISS sperm flagellum
GO:0042073 ISS intraciliary transport
GO:0042384 IMP cilium assembly
GO:0043547 IEA positive regulation of GTPase activity
GO:0044822 IDA poly(A) RNA binding
GO:0050896 IEA response to stimulus

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000115532 Rpgr-002 protein_coding Mus_musculus 0 1123
ENSMUST00000044598 Rpgr-001 protein_coding Mus_musculus 0 1123
ENSMUST00000115533 Rpgr-005 protein_coding Mus_musculus 0 1042
ENSMUST00000073392 Rpgr-003 protein_coding Mus_musculus 0 1042
ENSMUST00000072393 Rpgr-006 protein_coding Mus_musculus 0 1042
ENSMUST00000115534 Rpgr-004 protein_coding Mus_musculus 0 1031
ENSMUST00000155734 Rpgr-007 retained_intron Mus_musculus 0 1024
ENSMUST00000124744 Rpgr-008 retained_intron Mus_musculus 0 584

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