C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: multiple coagulation factor deficiency 2
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000319466 MCFD2-001 ENSG00000180398 9606 - 2:46901874-46915868 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000319466
Transcript ID Adipose Adrenal Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000319466 24.323±0.00 21.245±0.00 12.480±6.33 18.422±6.50 13.419±6.02 5.089±1.66 18.139±0.53 20.663±12.54 17.075±8.49 16.699±0.00 21.278±11.16 27.125±3.47 23.560±9.27

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0006KK CIL_0006KK_0001 CGP 2:46698952-46941855
CIL_0008D2 CIL_0008D2_0001 VISTA 2:46768636-47372293
CIL_0003T5 CIL_0003T5_0002 CGP 2:46901870-47076137

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005509 IEA calcium ion binding
GO:0005783 IEA endoplasmic reticulum
GO:0005794 IEA Golgi apparatus
GO:0012507 TAS ER to Golgi transport vesicle membrane
GO:0015031 IEA protein transport
GO:0016192 IEA vesicle-mediated transport
GO:0018279 TAS protein N-linked glycosylation via asparagine
GO:0043687 TAS post-translational protein modification
GO:0044267 TAS cellular protein metabolic process

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000144236 Mcfd2-002 protein_coding Mus_musculus 0 422
ENSMUST00000024963 Mcfd2-001 protein_coding Mus_musculus 0 422
ENSMUST00000129616 Mcfd2-005 protein_coding Mus_musculus 0 418
ENSMUST00000151155 Mcfd2-003 protein_coding Mus_musculus 0 339
ENSMUST00000145895 Mcfd2-007 protein_coding Mus_musculus 0 278

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