C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: intraflagellar transport 88
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000319980 IFT88-002 ENSG00000032742 9606 + 13:20567138-20691437 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdrenalBreastOvaryPlacentaTestisENST00000319980
Transcript ID Adrenal Breast Ovary Placenta Testis
ENST00000319980 1.073±0.00 0.488±0.03 1.375±0.00 0.250±0.00 3.287±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0003SM CIL_0003SM_0001 CGP 13:20403667-20691437
CIL_0003SN CIL_0003SN_0001 CGP 13:20567069-20723098

Gene Ontology

GO IDEvidence TypeGO Description
GO:0001654 IEA eye development
GO:0001822 IEA kidney development
GO:0001889 IEA liver development
GO:0002080 IEA acrosomal membrane
GO:0003382 IEA epithelial cell morphogenesis
GO:0005515 IEA protein binding
GO:0005813 IEA centrosome
GO:0005814 ISS centriole
GO:0005929 ISS cilium
GO:0005930 IEA axoneme
GO:0007219 IEA Notch signaling pathway
GO:0007224 IEA smoothened signaling pathway
GO:0007288 IEA sperm axoneme assembly
GO:0007290 IEA spermatid nucleus elongation
GO:0007368 IEA determination of left/right symmetry
GO:0007399 IEA nervous system development
GO:0007420 IEA brain development
GO:0007507 IEA heart development
GO:0008104 IEA protein localization
GO:0008544 IEA epidermis development
GO:0008589 IEA regulation of smoothened signaling pathway
GO:0009887 IEA organ morphogenesis
GO:0009952 IEA anterior/posterior pattern specification
GO:0009953 IEA dorsal/ventral pattern formation
GO:0019894 IEA kinesin binding
GO:0021513 IEA spinal cord dorsal/ventral patterning
GO:0021537 IEA telencephalon development
GO:0030324 IEA lung development
GO:0030992 ISS intraciliary transport particle B
GO:0031016 IEA pancreas development
GO:0031122 IEA cytoplasmic microtubule organization
GO:0031512 IEA motile primary cilium
GO:0031514 ISS motile cilium
GO:0032391 IEA photoreceptor connecting cilium
GO:0034405 IEA response to fluid shear stress
GO:0036064 ISS ciliary basal body
GO:0036334 IEA epidermal stem cell homeostasis
GO:0042384 IEA cilium assembly
GO:0042487 IEA regulation of odontogenesis of dentin-containing tooth
GO:0042733 IEA embryonic digit morphogenesis
GO:0043568 IEA positive regulation of insulin-like growth factor receptor signaling pathway
GO:0045177 IEA apical part of cell
GO:0045598 IEA regulation of fat cell differentiation
GO:0048853 IEA forebrain morphogenesis
GO:0050680 IEA negative regulation of epithelial cell proliferation
GO:0055007 IEA cardiac muscle cell differentiation
GO:0060021 IEA palate development
GO:0060091 IEA kinocilium
GO:0060122 IEA inner ear receptor stereocilium organization
GO:0060173 IEA limb development
GO:0060271 ISS cilium morphogenesis
GO:0060411 IEA cardiac septum morphogenesis
GO:0060426 IEA lung vasculature development
GO:0060914 IEA heart formation
GO:0070613 IEA regulation of protein processing
GO:0072372 IEA primary cilium
GO:0090102 IEA cochlea development
GO:0097541 IEA axonemal basal plate
GO:0097542 IEA ciliary tip
GO:0097546 IEA ciliary base
GO:1902017 ISS regulation of cilium assembly
GO:2000785 ISS regulation of autophagic vacuole assembly

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000122063 Ift88-001 protein_coding Mus_musculus 0 2820
ENSMUST00000154492 Ift88-002 retained_intron Mus_musculus 0 1670
ENSMUST00000171682 Ift88-005 nonsense_mediated_decay Mus_musculus 0 571
ENSMUST00000150296 Ift88-003 nonsense_mediated_decay Mus_musculus 0 302

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