C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: intraflagellar transport 88
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000032742 IFT88 9606 + 13:20567069-20691437 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000319980 IFT88-002 20567138-20691437 protein_coding
  ENST00000351808 IFT88-001 20567069-20691362 protein_coding
  ENST00000389373 IFT88-007 20567166-20583016 protein_coding
  ENST00000461115 IFT88-003 20605056-20632139 processed_transcript
  ENST00000470695 IFT88-006 20663265-20671039 processed_transcript
  ENST00000482172 IFT88-005 20615791-20691217 processed_transcript
  ENST00000537103 IFT88-004 20597014-20642896 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000319980ENST00000351808ENST00000461115ENST00000482172ENST00000537103
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000319980 N/A 1.073±0.00 N/A N/A 0.488±0.03 N/A N/A N/A N/A N/A N/A 1.375±0.00 0.250±0.00 3.287±0.00
ENST00000351808 1.249±0.00 2.351±0.00 3.692±0.00 1.341±0.69 1.077±0.03 2.248±0.19 0.698±0.42 3.771±2.19 1.304±0.83 2.121±0.12 0.726±0.69 2.843±1.43 0.921±0.39 16.067±1.10
ENST00000461115 N/A N/A N/A N/A N/A N/A 0.347±0.00 N/A N/A N/A 0.208±0.00 N/A N/A N/A
ENST00000482172 N/A N/A N/A 0.832±0.00 0.890±0.00 N/A N/A 5.448±0.00 1.760±0.00 1.147±0.00 N/A 2.789±0.72 1.350±0.00 23.739±14.27
ENST00000537103 N/A N/A N/A N/A N/A N/A N/A N/A 0.686±0.00 N/A N/A N/A 0.157±0.00 N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0003SM CIL_0003SM_0001 CGP 13:20403667-20691437
CIL_0003SN CIL_0003SN_0001 CGP 13:20567069-20723098

Gene Ontology
GO IDEvidence TypeGO Description
GO:0001654 IEA eye development
GO:0001822 IEA kidney development
GO:0001889 IEA liver development
GO:0002080 IEA acrosomal membrane
GO:0003382 IEA epithelial cell morphogenesis
GO:0005515 IEA protein binding
GO:0005813 IEA centrosome
GO:0005814 ISS centriole
GO:0005929 ISS cilium
GO:0005930 IEA axoneme
GO:0007219 IEA Notch signaling pathway
GO:0007224 IEA smoothened signaling pathway
GO:0007288 IEA sperm axoneme assembly
GO:0007290 IEA spermatid nucleus elongation
GO:0007368 IEA determination of left/right symmetry
GO:0007399 IEA nervous system development
GO:0007420 IEA brain development
GO:0007507 IEA heart development
GO:0008104 IEA protein localization
GO:0008544 IEA epidermis development
GO:0008589 IEA regulation of smoothened signaling pathway
GO:0009887 IEA organ morphogenesis
GO:0009952 IEA anterior/posterior pattern specification
GO:0009953 IEA dorsal/ventral pattern formation
GO:0019894 IEA kinesin binding
GO:0021513 IEA spinal cord dorsal/ventral patterning
GO:0021537 IEA telencephalon development
GO:0030324 IEA lung development
GO:0030992 ISS intraciliary transport particle B
GO:0031016 IEA pancreas development
GO:0031122 IEA cytoplasmic microtubule organization
GO:0031512 IEA motile primary cilium
GO:0031514 ISS motile cilium
GO:0032391 IEA photoreceptor connecting cilium
GO:0034405 IEA response to fluid shear stress
GO:0036064 ISS ciliary basal body
GO:0036334 IEA epidermal stem cell homeostasis
GO:0042384 IEA cilium assembly
GO:0042487 IEA regulation of odontogenesis of dentin-containing tooth
GO:0042733 IEA embryonic digit morphogenesis
GO:0043568 IEA positive regulation of insulin-like growth factor receptor signaling pathway
GO:0045177 IEA apical part of cell
GO:0045598 IEA regulation of fat cell differentiation
GO:0048853 IEA forebrain morphogenesis
GO:0050680 IEA negative regulation of epithelial cell proliferation
GO:0055007 IEA cardiac muscle cell differentiation
GO:0060021 IEA palate development
GO:0060091 IEA kinocilium
GO:0060122 IEA inner ear receptor stereocilium organization
GO:0060173 IEA limb development
GO:0060271 ISS cilium morphogenesis
GO:0060411 IEA cardiac septum morphogenesis
GO:0060426 IEA lung vasculature development
GO:0060914 IEA heart formation
GO:0070613 IEA regulation of protein processing
GO:0072372 IEA primary cilium
GO:0090102 IEA cochlea development
GO:0097541 IEA axonemal basal plate
GO:0097542 IEA ciliary tip
GO:0097546 IEA ciliary base
GO:1902017 ISS regulation of cilium assembly
GO:2000785 ISS regulation of autophagic vacuole assembly

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000027234 ift88 intraflagellar transport 88 homolog protein_coding Danio_rerio
ENSMUSG00000040040 Ift88 intraflagellar transport 88 protein_coding Mus_musculus

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