C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0003SM_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000165475-ENSG00000032742 CGP 9606 13:20403667-20691437
GeneTranscriptPositionBiotype
ENSG00000032742 (IFT88)
intraflagellar transport 88 		ENST00000319980 (IFT88-002) 20567138-20691437 protein_coding
ENST00000351808 (IFT88-001) 20567069-20691362 protein_coding
ENST00000389373 (IFT88-007) 20567166-20583016 protein_coding
ENST00000461115 (IFT88-003) 20605056-20632139 processed_transcript
ENST00000470695 (IFT88-006) 20663265-20671039 processed_transcript
ENST00000482172 (IFT88-005) 20615791-20691217 processed_transcript
ENST00000537103 (IFT88-004) 20597014-20642896 protein_coding
ENSG00000165475 (CRYL1)
crystallin, lambda 1 		ENST00000298248 (CRYL1-001) 20403667-20525857 protein_coding
ENST00000382812 (CRYL1-002) 20403671-20525857 protein_coding
ENST00000480748 (CRYL1-003) 20426695-20489436 protein_coding
ENSG00000222726 (RNU2-7P)
RNA, U2 small nuclear 7, pseudogene 		ENST00000410794 (RNU2-7P-201) 20612161-20612338 snRNA
ENSG00000238286 (SLC35E1P1)
solute carrier family 35, member E1 pseudogene 1 		ENST00000419313 (SLC35E1P1-001) 20607268-20608131 processed_pseudogene
ENSG00000263978 (MIR4499)
microRNA 4499 		ENST00000584834 (MIR4499-201) 20433778-20433846 miRNA
ENSG00000277020 (RP11-476H16.1)
 ENST00000615483 (RP11-476H16.1-002) 20564708-20566835 antisense
ENST00000618162 (RP11-476H16.1-001) 20564772-20567045 antisense

Homo sapiens Ensembl (GRCh38)

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Structures from Ensembl
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Structures from Ensembl
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CIL_0003SM_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000021947-ENSMUSG00000040040 CGP 10090 14:57275034-57517936
GeneTranscriptPositionBiotype
ENSMUSG00000021947 (Cryl1)
crystallin, lambda 1 		ENSMUST00000022517 (Cryl1-201) 57275034-57398483 protein_coding
ENSMUSG00000040040 (Ift88)
intraflagellar transport 88 		ENSMUST00000122063 (Ift88-001) 57424062-57517936 protein_coding
ENSMUST00000139943 (Ift88-004) 57479646-57487611 retained_intron
ENSMUST00000150296 (Ift88-003) 57424080-57439775 nonsense_mediated_decay
ENSMUST00000154492 (Ift88-002) 57424106-57517936 retained_intron
ENSMUST00000171682 (Ift88-005) 57444443-57477969 nonsense_mediated_decay
ENSMUSG00000077497 (Gm23593)
predicted gene, 23593 		ENSMUST00000104309 (Gm23593-201) 57333366-57333485 snoRNA
ENSMUSG00000081238 (Gm15836)
predicted gene 15836 		ENSMUST00000119952 (Gm15836-001) 57435721-57436513 processed_pseudogene

Mus musculus Ensembl (GRCm38)

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Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0003SM_0001ENSG00000032742ENST00000319980ENST00000351808ENST00000389373ENST00000461115ENST00000470695ENST00000482172ENST00000537103ENSG00000165475ENST00000298248ENST00000382812ENST00000480748ENSG00000222726ENST00000410794ENSG00000238286ENST00000419313ENSG00000263978ENST00000584834ENSG00000277020ENST00000615483ENST00000618162CIL_0003SM_0002ENSMUSG00000021947ENSMUST00000022517ENSMUSG00000040040ENSMUST00000122063ENSMUST00000139943ENSMUST00000150296ENSMUST00000154492ENSMUST00000171682ENSMUSG00000077497ENSMUST00000104309ENSMUSG00000081238ENSMUST00000119952
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0003SM_0001ENSG00000032742ENST00000319980ENST00000351808ENST00000461115ENST00000482172ENST00000537103ENSG00000165475ENST00000298248ENSG00000222726ENST00000410794ENSG00000238286ENST00000419313ENSG00000263978ENST00000584834ENSG00000277020ENST00000615483ENST00000618162CIL_0003SM_0002ENSMUSG00000021947ENSMUST00000022517ENSMUSG00000040040ENSMUST00000122063ENSMUST00000139943ENSMUST00000150296ENSMUST00000154492ENSMUSG00000077497ENSMUST00000104309ENSMUSG00000081238ENSMUST00000119952
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000032742 ENST00000319980 N/A 1.073±0.00 N/A N/A 0.488±0.03 N/A N/A N/A N/A N/A N/A 1.375±0.00 0.250±0.00 3.287±0.00
ENST00000351808 1.249±0.00 2.351±0.00 3.692±0.00 1.341±0.69 1.077±0.03 2.248±0.19 0.698±0.42 3.771±2.19 1.304±0.83 2.121±0.12 0.726±0.69 2.843±1.43 0.921±0.39 16.067±1.10
ENST00000389373 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000461115 N/A N/A N/A N/A N/A N/A 0.347±0.00 N/A N/A N/A 0.208±0.00 N/A N/A N/A
ENST00000470695 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000482172 N/A N/A N/A 0.832±0.00 0.890±0.00 N/A N/A 5.448±0.00 1.760±0.00 1.147±0.00 N/A 2.789±0.72 1.350±0.00 23.739±14.27
ENST00000537103 N/A N/A N/A N/A N/A N/A N/A N/A 0.686±0.00 N/A N/A N/A 0.157±0.00 N/A
ENSG00000165475 ENST00000298248 14.461±0.00 12.423±0.00 23.227±0.00 23.237±13.41 9.020±2.80 10.791±2.68 4.444±2.91 62.948±20.39 34.256±30.71 9.331±5.54 3.273±2.87 15.635±6.77 10.647±0.35 6.880±4.37
ENST00000382812 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000480748 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000222726 ENST00000410794 N/A 0.329±0.00 2.938±0.00 0.253±0.00 0.080±0.00 N/A 0.074±0.00 0.162±0.00 0.290±0.00 N/A N/A 0.202±0.00 N/A 0.499±0.27
ENSG00000238286 ENST00000419313 N/A 0.230±0.00 0.396±0.00 0.425±0.16 0.210±0.11 0.348±0.30 0.119±0.02 0.198±0.01 0.020±0.00 N/A N/A 0.258±0.06 0.073±0.00 0.360±0.23
ENSG00000263978 ENST00000584834 N/A N/A N/A 1.020±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000277020 ENST00000615483 N/A N/A 0.210±0.00 1.161±0.00 0.085±0.00 N/A 0.026±0.00 0.170±0.00 0.122±0.00 0.100±0.00 0.466±0.00 N/A N/A 0.598±0.42
ENST00000618162 0.144±0.00 0.208±0.00 N/A 0.237±0.00 N/A N/A N/A 0.867±0.56 0.026±0.00 0.808±0.00 N/A 0.154±0.01 N/A 0.547±0.00
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000021947 ENSMUST00000022517 11.476±0.89 5.375±0.87 22.016±3.67 4.437±2.18 9.512±2.89 39.845±7.05 3.663±0.65 205.949±10.23 8.877±5.26 10.546±0.90 2.451±0.33 26.465±4.67 11.145±6.74 2.080±0.58
ENSMUSG00000040040 ENSMUST00000122063 1.017±0.37 0.698±0.24 3.853±0.34 3.990±0.45 0.734±0.28 0.807±0.16 0.725±0.06 1.907±0.54 0.712±0.30 1.516±0.42 1.215±0.16 4.669±2.93 2.850±0.88 16.309±6.26
ENSMUST00000139943 2.374±0.32 N/A N/A N/A 1.375±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000150296 2.813±0.00 1.438±0.47 N/A N/A 1.590±0.01 1.106±0.30 1.097±0.53 2.631±0.24 0.848±0.03 2.995±0.96 N/A 3.678±0.96 N/A 12.733±0.22
ENSMUST00000154492 0.357±0.21 0.329±0.01 0.751±0.06 0.978±0.43 N/A 0.264±0.01 N/A 0.312±0.02 0.197±0.03 N/A N/A 0.807±0.11 0.418±0.15 N/A
ENSMUST00000171682 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUSG00000077497 ENSMUST00000104309 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 19.725±0.00 N/A
ENSMUSG00000081238 ENSMUST00000119952 0.124±0.02 0.113±0.00 0.058±0.00 0.162±0.05 0.139±0.10 0.248±0.19 0.091±0.05 0.116±0.04 0.032±0.02 0.164±0.08 N/A 0.338±0.20 0.044±0.02 0.223±0.09

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