C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0003SN_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000032742-ENSG00000172458 CGP 9606 13:20567069-20723098
GeneTranscriptPositionBiotype
ENSG00000032742 (IFT88)
intraflagellar transport 88 		ENST00000319980 (IFT88-002) 20567138-20691437 protein_coding
ENST00000351808 (IFT88-001) 20567069-20691362 protein_coding
ENST00000389373 (IFT88-007) 20567166-20583016 protein_coding
ENST00000461115 (IFT88-003) 20605056-20632139 processed_transcript
ENST00000470695 (IFT88-006) 20663265-20671039 processed_transcript
ENST00000482172 (IFT88-005) 20615791-20691217 processed_transcript
ENST00000537103 (IFT88-004) 20597014-20642896 protein_coding
ENSG00000172458 (IL17D)
interleukin 17D 		ENST00000304920 (IL17D-001) 20703343-20723098 protein_coding
ENST00000468605 (IL17D-002) 20704079-20721685 nonsense_mediated_decay
ENST00000498088 (IL17D-003) 20702127-20704086 protein_coding
ENSG00000222726 (RNU2-7P)
RNA, U2 small nuclear 7, pseudogene 		ENST00000410794 (RNU2-7P-201) 20612161-20612338 snRNA
ENSG00000238286 (SLC35E1P1)
solute carrier family 35, member E1 pseudogene 1 		ENST00000419313 (SLC35E1P1-001) 20607268-20608131 processed_pseudogene
ENSG00000278291 (RP11-172H24.4)
 ENST00000610494 (RP11-172H24.4-001) 20699307-20703718 antisense
ENSG00000279135 (RP11-261P13.5)
 ENST00000625156 (RP11-261P13.5-001) 20712431-20714146 TEC

Homo sapiens Ensembl (GRCh38)

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CIL_0003SN_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000040040-ENSMUSG00000050222 CGP 10090 14:57424062-57543165
GeneTranscriptPositionBiotype
ENSMUSG00000040040 (Ift88)
intraflagellar transport 88 		ENSMUST00000122063 (Ift88-001) 57424062-57517936 protein_coding
ENSMUST00000139943 (Ift88-004) 57479646-57487611 retained_intron
ENSMUST00000150296 (Ift88-003) 57424080-57439775 nonsense_mediated_decay
ENSMUST00000154492 (Ift88-002) 57424106-57517936 retained_intron
ENSMUST00000171682 (Ift88-005) 57444443-57477969 nonsense_mediated_decay
ENSMUSG00000050222 (Il17d)
interleukin 17D 		ENSMUST00000089494 (Il17d-201) 57524829-57543165 protein_coding
ENSMUSG00000081238 (Gm15836)
predicted gene 15836 		ENSMUST00000119952 (Gm15836-001) 57435721-57436513 processed_pseudogene

Mus musculus Ensembl (GRCm38)

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Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0003SN_0001ENSG00000032742ENST00000319980ENST00000351808ENST00000389373ENST00000461115ENST00000470695ENST00000482172ENST00000537103ENSG00000172458ENST00000304920ENST00000468605ENST00000498088ENSG00000222726ENST00000410794ENSG00000238286ENST00000419313ENSG00000278291ENST00000610494ENSG00000279135ENST00000625156CIL_0003SN_0002ENSMUSG00000040040ENSMUST00000122063ENSMUST00000139943ENSMUST00000150296ENSMUST00000154492ENSMUST00000171682ENSMUSG00000050222ENSMUST00000089494ENSMUSG00000081238ENSMUST00000119952
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0003SN_0001ENSG00000032742ENST00000319980ENST00000351808ENST00000461115ENST00000482172ENST00000537103ENSG00000172458ENST00000304920ENST00000498088ENSG00000222726ENST00000410794ENSG00000238286ENST00000419313ENSG00000278291ENST00000610494ENSG00000279135ENST00000625156CIL_0003SN_0002ENSMUSG00000040040ENSMUST00000122063ENSMUST00000139943ENSMUST00000150296ENSMUST00000154492ENSMUSG00000050222ENSMUST00000089494ENSMUSG00000081238ENSMUST00000119952
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000032742 ENST00000319980 N/A 1.073±0.00 N/A N/A 0.488±0.03 N/A N/A N/A N/A N/A N/A 1.375±0.00 0.250±0.00 3.287±0.00
ENST00000351808 1.249±0.00 2.351±0.00 3.692±0.00 1.341±0.69 1.077±0.03 2.248±0.19 0.698±0.42 3.771±2.19 1.304±0.83 2.121±0.12 0.726±0.69 2.843±1.43 0.921±0.39 16.067±1.10
ENST00000389373 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000461115 N/A N/A N/A N/A N/A N/A 0.347±0.00 N/A N/A N/A 0.208±0.00 N/A N/A N/A
ENST00000470695 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000482172 N/A N/A N/A 0.832±0.00 0.890±0.00 N/A N/A 5.448±0.00 1.760±0.00 1.147±0.00 N/A 2.789±0.72 1.350±0.00 23.739±14.27
ENST00000537103 N/A N/A N/A N/A N/A N/A N/A N/A 0.686±0.00 N/A N/A N/A 0.157±0.00 N/A
ENSG00000172458 ENST00000304920 0.276±0.00 N/A N/A 20.049±0.00 1.655±0.00 0.129±0.00 0.525±0.33 0.271±0.11 0.363±0.10 0.562±0.51 3.968±0.00 2.658±1.78 1.545±0.09 3.541±0.75
ENST00000468605 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000498088 0.485±0.00 N/A 0.058±0.00 19.135±0.00 N/A 1.074±0.00 1.767±0.00 0.791±0.00 0.163±0.00 0.441±0.00 4.894±0.00 2.937±1.77 2.133±1.27 N/A
ENSG00000222726 ENST00000410794 N/A 0.329±0.00 2.938±0.00 0.253±0.00 0.080±0.00 N/A 0.074±0.00 0.162±0.00 0.290±0.00 N/A N/A 0.202±0.00 N/A 0.499±0.27
ENSG00000238286 ENST00000419313 N/A 0.230±0.00 0.396±0.00 0.425±0.16 0.210±0.11 0.348±0.30 0.119±0.02 0.198±0.01 0.020±0.00 N/A N/A 0.258±0.06 0.073±0.00 0.360±0.23
ENSG00000278291 ENST00000610494 0.061±0.00 0.199±0.00 N/A N/A N/A N/A 0.024±0.00 N/A 0.036±0.02 N/A N/A 0.248±0.00 0.181±0.09 N/A
ENSG00000279135 ENST00000625156 0.037±0.00 0.101±0.00 N/A 0.145±0.07 0.111±0.00 0.101±0.00 0.053±0.00 0.055±0.00 N/A 0.008±0.00 N/A 0.075±0.04 0.029±0.00 0.376±0.12
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000040040 ENSMUST00000122063 1.017±0.37 0.698±0.24 3.853±0.34 3.990±0.45 0.734±0.28 0.807±0.16 0.725±0.06 1.907±0.54 0.712±0.30 1.516±0.42 1.215±0.16 4.669±2.93 2.850±0.88 16.309±6.26
ENSMUST00000139943 2.374±0.32 N/A N/A N/A 1.375±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000150296 2.813±0.00 1.438±0.47 N/A N/A 1.590±0.01 1.106±0.30 1.097±0.53 2.631±0.24 0.848±0.03 2.995±0.96 N/A 3.678±0.96 N/A 12.733±0.22
ENSMUST00000154492 0.357±0.21 0.329±0.01 0.751±0.06 0.978±0.43 N/A 0.264±0.01 N/A 0.312±0.02 0.197±0.03 N/A N/A 0.807±0.11 0.418±0.15 N/A
ENSMUST00000171682 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUSG00000050222 ENSMUST00000089494 6.651±2.72 4.586±0.44 7.641±3.76 10.675±2.88 8.487±3.15 10.359±2.78 1.802±0.27 0.758±0.26 0.233±0.25 6.137±1.61 0.666±0.10 11.020±5.23 2.305±1.15 0.527±0.00
ENSMUSG00000081238 ENSMUST00000119952 0.124±0.02 0.113±0.00 0.058±0.00 0.162±0.05 0.139±0.10 0.248±0.19 0.091±0.05 0.116±0.04 0.032±0.02 0.164±0.08 N/A 0.338±0.20 0.044±0.02 0.223±0.09

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