| Transcript ID | Brain |
|---|---|
| ENST00000320203 | 0.384±0.00 |
C-It-Loci: A knowledge database for tissue-enriched loci.
Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main
Transcript Info |
||||||
| Description: | RNA binding protein with multiple splicing | |||||
|---|---|---|---|---|---|---|
| Transcript Accession | Transcript Name | Contained in Gene | Tax ID | Strand | Position | Biotype |
ENST00000320203  |
RBPMS-002 |
ENSG00000157110 |
9606 | + |
8:30384511-30572256  |
protein_coding |
Expression Patterns
|
Conserved Regions | |||
|---|---|---|---|
| Region ID | Sub-Region | Region Type | Position |
| CIL_0008D0 | CIL_0008D0_0001 | VISTA | 8:29977526-30581393 |
| CIL_0008IH | CIL_0008IH_0001 | VISTA | 8:30111104-30714589 |
Gene Ontology | ||
|---|---|---|
| GO ID | Evidence Type | GO Description |
| GO:0000166 | IEA | nucleotide binding |
| GO:0003676 | IEA | nucleic acid binding |
| GO:0003713 | IDA | transcription coactivator activity |
| GO:0005515 | IPI | protein binding |
| GO:0005634 | IDA | nucleus |
| GO:0005737 | IDA | cytoplasm |
| GO:0006351 | IEA | transcription, DNA-templated |
| GO:0006355 | IEA | regulation of transcription, DNA-templated |
| GO:0006396 | TAS | RNA processing |
| GO:0008143 | IDA | poly(A) binding |
| GO:0010862 | IDA | positive regulation of pathway-restricted SMAD protein phosphorylation |
| GO:0044822 | IDA | poly(A) RNA binding |
| GO:0060391 | IDA | positive regulation of SMAD protein import into nucleus |
Homologs | |||||
| ENSEMBL Accession | Gene Name | Biotype | Species | E-Value | Bit Score |
|
ENSMUST00000191473
|
Rbpms-201 | protein_coding | Mus_musculus | 0 | 957 |
|
ENSMUST00000182987
|
Rbpms-004 | nonsense_mediated_decay | Mus_musculus | 0 | 957 |
|
ENSMUST00000053251
|
Rbpms-002 | protein_coding | Mus_musculus | 0 | 957 |
|
ENSMUST00000033995
|
Rbpms-003 | protein_coding | Mus_musculus | 0 | 863 |
|
ENSMUST00000033994
|
Rbpms-001 | protein_coding | Mus_musculus | 0 | 665 |
|
ENSMUST00000183088
|
Rbpms-007 | protein_coding | Mus_musculus | 0 | 647 |
|
ENSMUST00000182184
|
Rbpms-005 | processed_transcript | Mus_musculus | 0 | 562 |
|
ENSMUST00000182256
|
Rbpms-009 | nonsense_mediated_decay | Mus_musculus | 0 | 562 |
|
ENSMUST00000183062
|
Rbpms-010 | protein_coding | Mus_musculus | 0 | 431 |
|
ENSMUST00000183336
|
Rbpms-012 | nonsense_mediated_decay | Mus_musculus | 0 | 279 |
|
ENSMUST00000182871
|
Rbpms-006 | processed_transcript | Mus_musculus | 0 | 217 |
|
ENSMUST00000182926
|
Rbpms-011 | nonsense_mediated_decay | Mus_musculus | 2e-25 | 122 |
