C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_000646_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000154997-ENSG00000249773 CGP 9606 7:55793544-55955239
GeneTranscriptPositionBiotype
ENSG00000146729 (GBAS)
glioblastoma amplified sequence 		ENST00000322090 (GBAS-001) 55964581-56000181 protein_coding
ENST00000415967 (GBAS-011) 55981473-55999304 nonsense_mediated_decay
ENST00000437587 (GBAS-004) 55964962-55994938 protein_coding
ENST00000446692 (GBAS-005) 55951793-55984877 protein_coding
ENST00000446778 (GBAS-002) 55964581-56000181 protein_coding
ENST00000456204 (GBAS-007) 55964606-55983812 nonsense_mediated_decay
ENST00000464772 (GBAS-010) 55981771-55983790 retained_intron
ENST00000470036 (GBAS-009) 55964595-55978599 retained_intron
ENST00000472404 (GBAS-008) 55965113-55981498 processed_transcript
ENST00000487370 (GBAS-006) 55964998-55981503 processed_transcript
ENST00000497279 (GBAS-003) 55978907-56000178 retained_intron
ENSG00000154997 (SEPT14)
septin 14 		ENST00000388975 (SEPT14-001) 55793544-55862789 protein_coding
ENST00000477628 (SEPT14-002) 55844537-55862755 processed_transcript
ENSG00000225018 (RP11-419M24.5)
 ENST00000420654 (RP11-419M24.5-001) 55876738-55877024 processed_pseudogene
ENSG00000225270 (CICP12)
capicua transcriptional repressor pseudogene 12 		ENST00000455801 (CICP12-001) 55798034-55798876 processed_pseudogene
ENSG00000227499 (RP11-419M24.4)
 ENST00000452998 (RP11-419M24.4-001) 55877912-55878164 processed_pseudogene
ENSG00000229762 (RP11-419M24.1)
 ENST00000443044 (RP11-419M24.1-001) 55810779-55811411 processed_pseudogene
ENSG00000235738 (RP11-419M24.2)
 ENST00000457211 (RP11-419M24.2-001) 55797946-55798480 processed_pseudogene
ENSG00000239789 (MRPS17)
mitochondrial ribosomal protein S17 		ENST00000285298 (MRPS17-001) 55951819-55956501 protein_coding
ENST00000443449 (MRPS17-002) 55951963-55955172 protein_coding
ENSG00000249773 (MRPS17)
mitochondrial ribosomal protein S17 		ENST00000426595 (MRPS17-001) 55887277-55955239 protein_coding

Homo sapiens Ensembl (GRCh38)

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CIL_000646_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000034219-ENSMUSG00000034211 CGP 10090 5:129683391-129718875
GeneTranscriptPositionBiotype
ENSMUSG00000034211 (Mrps17)
mitochondrial ribosomal protein S17 		ENSMUST00000042191 (Mrps17-002) 129715503-129718480 protein_coding
ENSMUST00000118420 (Mrps17-006) 129715504-129718397 protein_coding
ENSMUST00000119576 (Mrps17-001) 129715497-129718694 protein_coding
ENSMUST00000119604 (Mrps17-003) 129715516-129718691 protein_coding
ENSMUST00000119985 (Mrps17-010) 129715577-129718447 protein_coding
ENSMUST00000121339 (Mrps17-004) 129715511-129718875 protein_coding
ENSMUST00000121813 (Mrps17-009) 129715558-129718290 protein_coding
ENSMUST00000136108 (Mrps17-008) 129715534-129718054 protein_coding
ENSMUST00000138812 (Mrps17-005) 129715697-129716833 protein_coding
ENSMUST00000154358 (Mrps17-007) 129715509-129716851 protein_coding
ENSMUSG00000034219 (Sept14)
septin 14 		ENSMUST00000042266 (Sept14-201) 129683402-129704259 protein_coding
ENSMUST00000182381 (Sept14-002) 129683391-129693232 processed_transcript
ENSMUST00000182386 (Sept14-001) 129683490-129708511 protein_coding

Mus musculus Ensembl (GRCm38)

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Expression Patterns

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Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_000646_0001ENSG00000146729ENST00000322090ENST00000415967ENST00000437587ENST00000446692ENST00000446778ENST00000456204ENST00000464772ENST00000470036ENST00000472404ENST00000487370ENST00000497279ENSG00000154997ENST00000388975ENST00000477628ENSG00000225018ENST00000420654ENSG00000225270ENST00000455801ENSG00000227499ENST00000452998ENSG00000229762ENST00000443044ENSG00000235738ENST00000457211ENSG00000239789ENST00000285298ENST00000443449ENSG00000249773ENST00000426595CIL_000646_0002ENSMUSG00000034211ENSMUST00000042191ENSMUST00000118420ENSMUST00000119576ENSMUST00000119604ENSMUST00000119985ENSMUST00000121339ENSMUST00000121813ENSMUST00000136108ENSMUST00000138812ENSMUST00000154358ENSMUSG00000034219ENSMUST00000042266ENSMUST00000182381ENSMUST00000182386
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_000646_0001ENSG00000146729ENST00000322090ENST00000415967ENST00000437587ENST00000446692ENST00000446778ENST00000472404ENST00000497279ENSG00000154997ENST00000388975ENSG00000225018ENST00000420654ENSG00000225270ENST00000455801ENSG00000227499ENST00000452998ENSG00000229762ENST00000443044ENSG00000235738ENST00000457211ENSG00000239789ENST00000285298ENST00000443449ENSG00000249773ENST00000426595CIL_000646_0002ENSMUSG00000034211ENSMUST00000042191ENSMUST00000118420ENSMUST00000119576ENSMUST00000119604ENSMUST00000121339ENSMUST00000121813ENSMUST00000136108ENSMUST00000154358ENSMUSG00000034219ENSMUST00000042266ENSMUST00000182381ENSMUST00000182386
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000146729 ENST00000322090 15.866±0.00 7.103±0.00 2.660±0.00 23.825±13.27 16.954±10.03 16.097±6.62 62.967±47.01 18.092±17.35 7.634±3.79 13.039±6.05 55.939±24.61 15.697±3.10 10.180±1.19 15.434±8.16
ENST00000415967 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 12.322±0.00 6.817±0.00 N/A
ENST00000437587 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 29.107±0.00 N/A N/A N/A
ENST00000446692 N/A N/A 4.530±0.00 N/A N/A N/A N/A 2.802±0.00 N/A 9.937±0.00 N/A N/A N/A N/A
ENST00000446778 N/A N/A N/A N/A 7.583±0.00 7.447±0.00 N/A N/A N/A N/A N/A N/A N/A 8.709±0.00
ENST00000456204 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000464772 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000470036 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000472404 N/A N/A 79.455±0.00 92.289±0.00 71.968±0.00 76.178±0.00 201.354±0.00 N/A 153.781±0.00 88.950±0.00 584.162±0.00 160.293±0.00 N/A N/A
ENST00000487370 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000497279 N/A N/A N/A N/A N/A N/A N/A 0.578±0.00 N/A N/A N/A N/A N/A N/A
ENSG00000154997 ENST00000388975 N/A N/A 0.011±0.00 0.021±0.00 0.128±0.00 0.008±0.00 N/A 0.100±0.09 0.136±0.12 0.007±0.00 0.024±0.00 0.042±0.02 0.047±0.01 8.353±2.26
ENST00000477628 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000225018 ENST00000420654 0.090±0.00 N/A N/A 0.092±0.00 N/A 0.040±0.00 0.041±0.00 0.044±0.00 N/A 0.115±0.00 0.118±0.00 N/A N/A 0.041±0.00
ENSG00000225270 ENST00000455801 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.073±0.00
ENSG00000227499 ENST00000452998 0.238±0.00 0.317±0.00 N/A 0.062±0.00 0.063±0.00 0.351±0.00 0.055±0.00 N/A N/A N/A 0.108±0.00 N/A N/A 0.219±0.00
ENSG00000229762 ENST00000443044 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.211±0.13
ENSG00000235738 ENST00000457211 N/A N/A N/A N/A N/A N/A N/A 0.106±0.00 N/A N/A N/A N/A N/A N/A
ENSG00000239789 ENST00000285298 5.671±0.00 7.906±0.00 N/A 6.192±0.00 4.224±0.00 3.535±0.00 N/A 6.324±3.20 5.405±0.00 N/A N/A 10.186±0.42 5.964±0.97 8.944±2.43
ENST00000443449 N/A N/A N/A N/A N/A N/A N/A N/A 11.088±0.00 N/A N/A N/A N/A N/A
ENSG00000249773 ENST00000426595 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 5.633±0.00
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000034211 ENSMUST00000042191 20.372±3.83 12.595±1.37 30.023±3.87 22.366±9.50 13.019±2.73 7.422±2.28 23.259±2.13 22.732±4.46 29.940±7.55 9.055±0.65 16.247±3.21 12.993±5.61 21.732±9.41 7.487±3.60
ENSMUST00000118420 6.696±0.85 9.605±0.86 N/A N/A 9.021±1.39 7.721±1.71 13.456±0.83 13.238±2.45 11.084±2.93 6.576±2.24 5.395±0.00 12.321±2.85 10.288±1.61 5.693±0.16
ENSMUST00000119576 5.532±0.48 9.501±2.11 N/A 6.797±0.00 9.695±2.03 7.359±2.52 8.403±2.16 9.066±2.67 6.754±0.53 9.687±4.74 N/A 12.644±4.24 7.173±0.16 4.756±0.56
ENSMUST00000119604 5.302±1.03 12.736±3.94 N/A N/A N/A 5.900±1.22 N/A 7.101±0.26 N/A 4.589±0.69 N/A 11.604±0.76 3.559±0.00 3.470±0.08
ENSMUST00000119985 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000121339 2.687±0.30 N/A 5.664±1.28 4.509±2.56 2.788±0.54 1.800±0.00 3.440±0.22 N/A 7.177±1.08 2.541±0.40 2.792±0.43 5.039±2.28 3.822±1.03 2.122±0.55
ENSMUST00000121813 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 5.370±0.00 N/A N/A N/A
ENSMUST00000136108 N/A N/A N/A N/A N/A N/A N/A 16.539±0.00 N/A N/A N/A N/A N/A N/A
ENSMUST00000138812 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000154358 N/A 27.598±5.84 N/A N/A N/A 17.816±7.04 24.658±0.00 N/A 27.046±9.45 N/A N/A 24.236±7.37 N/A 12.024±0.14
ENSMUSG00000034219 ENSMUST00000042266 0.075±0.05 N/A N/A N/A N/A N/A N/A 0.029±0.00 N/A N/A N/A 0.179±0.12 N/A 1.402±0.51
ENSMUST00000182381 0.140±0.00 N/A 0.009±0.00 N/A N/A N/A 0.052±0.00 N/A N/A 0.094±0.00 N/A 0.148±0.00 0.115±0.09 20.230±0.00
ENSMUST00000182386 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.199±0.00 N/A N/A

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