C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: serine/arginine repetitive matrix 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000323848 SRRM1-001 ENSG00000133226 9606 + 1:24643012-24673267 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; BladderBreastColonHeartKidneyLiverLungOvaryPlacentaTestisENST00000323848
Transcript ID Bladder Breast Colon Heart Kidney Liver Lung Ovary Placenta Testis
ENST00000323848 1.541±0.00 3.603±0.00 3.300±0.00 0.886±0.31 4.060±1.44 1.835±0.00 4.091±1.37 9.463±4.74 7.408±4.33 13.865±7.12

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007ZX CIL_0007ZX_0001 VISTA 1:24547215-25148615
CIL_0002GR CIL_0002GR_0002 CGP 1:24631716-24844324

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000375 TAS RNA splicing, via transesterification reactions
GO:0000398 IC mRNA splicing, via spliceosome
GO:0003677 IEA DNA binding
GO:0005634 IDA nucleus
GO:0005654 TAS nucleoplasm
GO:0005681 IEA spliceosomal complex
GO:0005829 TAS cytosol
GO:0006366 TAS transcription from RNA polymerase II promoter
GO:0006369 TAS termination of RNA polymerase II transcription
GO:0006397 IEA mRNA processing
GO:0006406 TAS mRNA export from nucleus
GO:0008380 TAS RNA splicing
GO:0010467 TAS gene expression
GO:0031124 TAS mRNA 3'-end processing
GO:0044822 IDA poly(A) RNA binding
GO:0071013 IDA catalytic step 2 spliceosome

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000105861 Srrm1-003 protein_coding Mus_musculus 0 3755
ENSMUST00000136342 Srrm1-015 protein_coding Mus_musculus 0 2239
ENSMUST00000084846 Srrm1-001 protein_coding Mus_musculus 0 2158
ENSMUST00000030613 Srrm1-002 protein_coding Mus_musculus 0 2117
ENSMUST00000150619 Srrm1-007 retained_intron Mus_musculus 0 1620
ENSMUST00000131373 Srrm1-008 protein_coding Mus_musculus 0 784
ENSMUST00000140050 Srrm1-013 protein_coding Mus_musculus 0 630
ENSMUST00000151251 Srrm1-011 retained_intron Mus_musculus 0 573
ENSMUST00000134019 Srrm1-005 processed_transcript Mus_musculus 0 492
ENSMUST00000154788 Srrm1-010 retained_intron Mus_musculus 0 470
ENSMUST00000131301 Srrm1-009 nonsense_mediated_decay Mus_musculus 0 468
ENSMUST00000134854 Srrm1-004 retained_intron Mus_musculus 0 429
ENSMUST00000162914 Srrm1-014 retained_intron Mus_musculus 0 409
ENSMUST00000136409 Srrm1-006 nonsense_mediated_decay Mus_musculus 0 335

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