C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: paxillin
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000323871 PXN-005 ENSG00000089159 9606 - 12:120210451-120265718 retained_intron

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdrenalBreastHeartLungMuscleOvaryTestisENST00000323871
Transcript ID Adrenal Breast Heart Lung Muscle Ovary Testis
ENST00000323871 6.230±0.00 4.321±0.00 4.106±0.00 9.323±0.00 7.030±5.39 5.146±2.17 2.913±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0009CQ CIL_0009CQ_0001 VISTA 12:119991644-120595694

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000086523 Pxn-002 protein_coding Mus_musculus 0 1247
ENSMUST00000125007 Pxn-004 processed_transcript Mus_musculus 0 1162
ENSMUST00000152156 Pxn-005 retained_intron Mus_musculus 0 1162
ENSMUST00000067268 Pxn-001 protein_coding Mus_musculus 0 1162
ENSMUST00000137716 Pxn-007 processed_transcript Mus_musculus 0 828
ENSMUST00000157050 Pxn-008 processed_transcript Mus_musculus 0 773
ENSDART00000123180 pxna-201 protein_coding Danio_rerio 0 684
ENSDART00000126598 pxna-202 protein_coding Danio_rerio 0 678
ENSDART00000085993 PXN (1 of 3)-201 protein_coding Danio_rerio 0 660
ENSMUST00000125054 Pxn-003 retained_intron Mus_musculus 0 651
ENSMUST00000153682 Pxn-009 processed_transcript Mus_musculus 0 412
ENSMUST00000138139 Pxn-012 retained_intron Mus_musculus 0 364
ENSMUST00000134198 Pxn-013 processed_transcript Mus_musculus 0 333
ENSMUST00000127345 Pxn-010 processed_transcript Mus_musculus 0 289
ENSMUST00000129897 Pxn-006 processed_transcript Mus_musculus 0 285

Loading