C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: eukaryotic translation initiation factor 4A2
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000323963 EIF4A2-001 ENSG00000156976 9606 + 3:186783547-186789900 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000323963
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000323963 24.844±0.00 24.376±0.00 23.676±0.00 138.948±5.32 45.913±0.00 111.074±74.09 52.085±8.59 22.055±11.49 73.293±0.00 53.385±11.23 70.804±38.85 132.099±0.00 22.665±1.87 122.329±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008LA CIL_0008LA_0001 VISTA 3:186647123-187250687
CIL_000042 CIL_000042_0001 CGP 3:186717276-186789900
CIL_000041 CIL_000041_0001 CGP 3:186783205-186807058

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000288 TAS nuclear-transcribed mRNA catabolic process, deadenylation-dependent decay
GO:0000289 TAS nuclear-transcribed mRNA poly(A) tail shortening
GO:0003676 IEA nucleic acid binding
GO:0003743 IEA translation initiation factor activity
GO:0004386 TAS helicase activity
GO:0005515 IPI protein binding
GO:0005524 IEA ATP binding
GO:0005829 TAS cytosol
GO:0006200 IEA ATP catabolic process
GO:0006412 TAS translation
GO:0006413 TAS translational initiation
GO:0006446 TAS regulation of translational initiation
GO:0008026 IEA ATP-dependent helicase activity
GO:0010467 TAS gene expression
GO:0016032 IEA viral process
GO:0016070 TAS RNA metabolic process
GO:0016071 TAS mRNA metabolic process
GO:0016281 TAS eukaryotic translation initiation factor 4F complex
GO:0019221 TAS cytokine-mediated signaling pathway
GO:0044267 TAS cellular protein metabolic process
GO:0044822 IDA poly(A) RNA binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000023599 Eif4a2-001 protein_coding Mus_musculus 0 2885
ENSMUST00000115341 Eif4a2-014 protein_coding Mus_musculus 0 2820
ENSMUST00000168891 Eif4a2-201 protein_coding Mus_musculus 0 2233
ENSMUST00000131871 Eif4a2-006 nonsense_mediated_decay Mus_musculus 0 2233
ENSMUST00000147117 Eif4a2-005 nonsense_mediated_decay Mus_musculus 0 2233
ENSMUST00000187168 Eif4a2-202 protein_coding Mus_musculus 0 1674
ENSMUST00000077605 Eif4a2-002 protein_coding Mus_musculus 0 1672
ENSMUST00000123413 Eif4a2-003 nonsense_mediated_decay Mus_musculus 0 1639
ENSDART00000130781 eif4a2-001 protein_coding Danio_rerio 0 867
ENSMUST00000148085 Eif4a2-016 retained_intron Mus_musculus 0 616
ENSMUST00000130113 Eif4a2-008 retained_intron Mus_musculus 0 593
ENSMUST00000125969 Eif4a2-022 retained_intron Mus_musculus 0 547
ENSMUST00000135020 Eif4a2-015 retained_intron Mus_musculus 0 540
ENSMUST00000142031 Eif4a2-009 processed_transcript Mus_musculus 0 501
ENSMUST00000144493 Eif4a2-020 retained_intron Mus_musculus 0 464
ENSMUST00000130775 Eif4a2-007 retained_intron Mus_musculus 0 436
ENSMUST00000140017 Eif4a2-017 retained_intron Mus_musculus 0 418
ENSMUST00000156227 Eif4a2-021 retained_intron Mus_musculus 0 383
ENSMUST00000141392 Eif4a2-012 retained_intron Mus_musculus 0 366
ENSMUST00000152129 Eif4a2-011 retained_intron Mus_musculus 0 363
ENSMUST00000149328 Eif4a2-013 retained_intron Mus_musculus 0 348
ENSMUST00000130483 Eif4a2-018 retained_intron Mus_musculus 0 327
ENSMUST00000125553 Eif4a2-019 retained_intron Mus_musculus 0 283
ENSMUST00000134816 Eif4a2-010 retained_intron Mus_musculus 0 263
ENSMUST00000150117 Eif4a2-004 retained_intron Mus_musculus 0 261
ENSDART00000134178 eif4a2-003 processed_transcript Danio_rerio 0 259
ENSDART00000147263 eif4a2-002 retained_intron Danio_rerio 0 259

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