C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: cytokine receptor-like factor 3
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000324238 CRLF3-001 ENSG00000176390 9606 - 17:30782684-30824776 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000324238
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000324238 1.395±0.00 5.700±0.00 1.226±0.00 1.805±0.50 1.592±0.00 2.421±0.00 0.355±0.00 1.051±0.00 1.460±0.96 3.802±1.12 0.966±0.00 3.700±1.47 4.092±0.55 5.880±0.79

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_000141 CIL_000141_0001 CGP 17:30769388-30895869

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000082 IMP G1/S transition of mitotic cell cycle
GO:0005515 IEA protein binding
GO:0005737 IDA cytoplasm
GO:0030308 IDA negative regulation of cell growth
GO:0045893 IDA positive regulation of transcription, DNA-templated
GO:0045944 IDA positive regulation of transcription from RNA polymerase II promoter
GO:0046427 IDA positive regulation of JAK-STAT cascade
GO:0071158 IDA positive regulation of cell cycle arrest

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000061283 Crlf3-001 protein_coding Mus_musculus 0 1568
ENSMUST00000092858 Crlf3-003 processed_transcript Mus_musculus 0 1223
ENSMUST00000103233 Crlf3-002 protein_coding Mus_musculus 0 1221
ENSMUST00000185254 RP24-81G13.1-001 processed_pseudogene Mus_musculus 0 1142
ENSMUST00000178893 Crlf3-007 nonsense_mediated_decay Mus_musculus 0 1110
ENSMUST00000177825 Crlf3-006 nonsense_mediated_decay Mus_musculus 0 774
ENSMUST00000179855 Crlf3-008 nonsense_mediated_decay Mus_musculus 0 527
ENSMUST00000178280 Crlf3-005 retained_intron Mus_musculus 0 460
ENSMUST00000147164 Crlf3-004 retained_intron Mus_musculus 0 279

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