C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: N-sulfoglucosamine sulfohydrolase
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000326317 SGSH-001 ENSG00000181523 9606 - 17:80209264-80220400 protein_coding

Homo sapiens EnsemblGRCh38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderOvaryPlacentaENST00000326317
Transcript ID Adipose Adrenal Bladder Ovary Placenta
ENST00000326317 4.568±0.00 7.674±0.00 0.335±0.00 16.534±0.00 9.179±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00031S CIL_00031S_0001 CGP 17:80135214-80209331
CIL_00042E CIL_00042E_0001 CGP 17:80169992-80220923
CIL_00042F CIL_00042F_0001 CGP 17:80206716-80253500

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003824 TAS:IEA catalytic activity
GO:0005515 IEA protein binding
GO:0005975 TAS carbohydrate metabolic process
GO:0006027 TAS glycosaminoglycan catabolic process
GO:0006029 TAS proteoglycan metabolic process
GO:0008152 IEA metabolic process
GO:0008484 IEA sulfuric ester hydrolase activity
GO:0016250 IEA N-sulfoglucosamine sulfohydrolase activity
GO:0030203 TAS glycosaminoglycan metabolic process
GO:0043202 TAS lysosomal lumen
GO:0044281 TAS small molecule metabolic process
GO:0046872 IEA metal ion binding
GO:0070062 IDA extracellular vesicular exosome

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000005173 Sgsh-001 protein_coding Mus_musculus 0 1530
ENSMUST00000133507 Sgsh-002 processed_transcript Mus_musculus 0 1214
ENSMUST00000100172 Sgsh-006 protein_coding Mus_musculus 0 743
ENSMUST00000136523 Sgsh-003 nonsense_mediated_decay Mus_musculus 0 693
ENSMUST00000126132 Sgsh-005 processed_transcript Mus_musculus 0 414
ENSMUST00000141540 Sgsh-004 processed_transcript Mus_musculus 0 254

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