C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: N-sulfoglucosamine sulfohydrolase (sulfamidase)
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000005173 Sgsh-001 ENSMUSG00000005043 10090 - 11:119343482-119355536 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000005173
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000005173 7.696±0.67 14.815±0.87 4.922±1.71 0.640±0.14 8.169±2.96 9.466±0.94 1.955±0.48 5.476±1.53 1.609±0.65 11.402±0.04 0.962±0.36 7.231±3.03 4.348±1.55 3.366±0.21

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00031S CIL_00031S_0002 CGP 11:119288363-119345375
CIL_00042E CIL_00042E_0002 CGP 11:119307768-119355536
CIL_00042F CIL_00042F_0002 CGP 11:119343425-119381079

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005515 IPI protein binding
GO:0005764 TAS lysosome
GO:0008484 ISS sulfuric ester hydrolase activity
GO:0030201 TAS heparan sulfate proteoglycan metabolic process
GO:0070062 IEA extracellular vesicular exosome

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000326317 SGSH-001 protein_coding Homo_sapiens 0 1530
ENST00000570427 SGSH-017 protein_coding Homo_sapiens 0 446
ENST00000570923 SGSH-004 protein_coding Homo_sapiens 0 928
ENST00000571051 SGSH-009 retained_intron Homo_sapiens 9.94922e-44 180
ENST00000571675 SGSH-008 retained_intron Homo_sapiens 0 492
ENST00000572208 SGSH-011 processed_transcript Homo_sapiens 0 226
ENST00000572257 SGSH-015 protein_coding Homo_sapiens 0 573
ENST00000573150 SGSH-003 nonsense_mediated_decay Homo_sapiens 0 1214
ENST00000574505 SGSH-016 nonsense_mediated_decay Homo_sapiens 0 327
ENST00000575282 SGSH-002 retained_intron Homo_sapiens 0 660
ENST00000576707 SGSH-005 protein_coding Homo_sapiens 0 584
ENST00000576856 SGSH-012 protein_coding Homo_sapiens 0 584
ENST00000576941 SGSH-010 nonsense_mediated_decay Homo_sapiens 0 316

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