C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: GS homeobox 2
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000326902 GSX2-001 ENSG00000180613 9606 + 4:54100031-54102505 protein_coding

Homo sapiens EnsemblGRCh38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; PlacentaENST00000326902
Transcript ID Placenta
ENST00000326902 0.070±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0001CS CIL_0001CS_0001 CGP 4:52872982-54295272
CIL_0001CL CIL_0001CL_0001 CGP 4:53377643-54295272
CIL_0007R1 CIL_0007R1_0001 VISTA 4:53715055-54316288
CIL_0008IT CIL_0008IT_0001 VISTA 4:53795831-54396629
CIL_0001CN CIL_0001CN_0001 CGP 4:54009789-54102505
CIL_0001CO CIL_0001CO_0001 CGP 4:54099523-54298247

Gene Ontology

GO IDEvidence TypeGO Description
GO:0002087 IEA regulation of respiratory gaseous exchange by neurological system process
GO:0003677 IEA DNA binding
GO:0005634 IEA nucleus
GO:0006351 IEA transcription, DNA-templated
GO:0006355 IEA regulation of transcription, DNA-templated
GO:0007389 IEA pattern specification process
GO:0007417 IEA central nervous system development
GO:0007420 IEA brain development
GO:0021527 IEA spinal cord association neuron differentiation
GO:0021544 IEA subpallium development
GO:0021575 IEA hindbrain morphogenesis
GO:0021798 IEA forebrain dorsal/ventral pattern formation
GO:0021889 IEA olfactory bulb interneuron differentiation
GO:0021978 IEA telencephalon regionalization
GO:0030334 IEA regulation of cell migration
GO:0043565 IEA sequence-specific DNA binding
GO:0045747 IEA positive regulation of Notch signaling pathway
GO:0048663 IEA neuron fate commitment
GO:0048665 IEA neuron fate specification
GO:0048714 IEA positive regulation of oligodendrocyte differentiation
GO:0048853 IEA forebrain morphogenesis
GO:0060163 IEA subpallium neuron fate commitment

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000040477 Gsx2-001 protein_coding Mus_musculus 0 952
ENSMUST00000160104 Gsx2-002 protein_coding Mus_musculus 0 525
ENSDART00000080466 hoxa3a-009 protein_coding Danio_rerio 0.000009 57

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