C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: RAB11B, member RAS oncogene family
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000328024 RAB11B-001 ENSG00000185236 9606 + 19:8390199-8404434 protein_coding

Homo sapiens EnsemblGRCh38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000328024
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000328024 84.566±0.00 79.241±0.00 8.511±0.00 52.336±35.52 38.616±31.27 34.460±28.22 38.260±37.02 36.161±29.01 22.936±16.70 40.749±32.49 27.701±23.18 61.308±49.03 83.743±19.83 68.900±19.12

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0002NQ CIL_0002NQ_0001 CGP 19:7926718-8445041
CIL_0000UT CIL_0000UT_0001 CGP 19:7958579-8445041

Gene Ontology

GO IDEvidence TypeGO Description
GO:0001881 ISS receptor recycling
GO:0003924 IDA:IEA GTPase activity
GO:0005515 IPI protein binding
GO:0005525 IDA:IEA GTP binding
GO:0005622 IEA intracellular
GO:0005737 IEA cytoplasm
GO:0005739 IEA mitochondrion
GO:0006184 IDA:IEA GTP catabolic process
GO:0006886 IEA intracellular protein transport
GO:0006913 IEA nucleocytoplasmic transport
GO:0007165 IEA signal transduction
GO:0007264 IEA small GTPase mediated signal transduction
GO:0008021 ISS synaptic vesicle
GO:0015031 IEA protein transport
GO:0016020 IEA membrane
GO:0016023 IEA cytoplasmic membrane-bounded vesicle
GO:0019003 IDA GDP binding
GO:0030054 IEA cell junction
GO:0031489 IPI myosin V binding
GO:0032402 ISS melanosome transport
GO:0033572 ISS transferrin transport
GO:0035773 ISS insulin secretion involved in cellular response to glucose stimulus
GO:0044070 IMP regulation of anion transport
GO:0045054 IMP constitutive secretory pathway
GO:0045055 ISS regulated secretory pathway
GO:0045335 IDA phagocytic vesicle
GO:0055037 ISS recycling endosome
GO:0055038 IEA recycling endosome membrane
GO:0070062 IDA extracellular vesicular exosome
GO:0071468 IDA cellular response to acidic pH
GO:0090150 IMP establishment of protein localization to membrane
GO:1990126 IMP retrograde transport, endosome to plasma membrane
GO:2000008 IMP regulation of protein localization to cell surface
GO:2001135 ISS regulation of endocytic recycling

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000057373 Rab11b-001 protein_coding Mus_musculus 0 1094
ENSMUST00000173987 Rab11b-004 nonsense_mediated_decay Mus_musculus 0 907
ENSMUST00000178377 Rab11b-ps2-201 processed_pseudogene Mus_musculus 0 898
ENSMUST00000173860 Rab11b-002 protein_coding Mus_musculus 0 758
ENSDART00000123392 rab11bb-201 protein_coding Danio_rerio 0 647
ENSDART00000036452 rab11bb-001 protein_coding Danio_rerio 0 641
ENSDART00000061366 rab11ba-001 protein_coding Danio_rerio 0 588
ENSDART00000133793 rab11ba-002 protein_coding Danio_rerio 0 547
ENSMUST00000172894 Rab11b-005 protein_coding Mus_musculus 0 505
ENSDART00000008920 rab11al-001 protein_coding Danio_rerio 0 398
ENSMUST00000174744 Rab11b-003 processed_transcript Mus_musculus 0 333
ENSDART00000148739 rab11ba-003 retained_intron Danio_rerio 6.00036e-42 176

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