C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: karyopherin alpha 2 (RAG cohort 1, importin alpha 1)
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000330459 KPNA2-001 ENSG00000182481 9606 + 17:68035519-68046842 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000330459
Transcript ID Adipose Adrenal Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000330459 4.418±0.00 7.262±0.00 9.729±2.00 4.491±1.32 4.194±0.96 3.945±2.28 5.234±3.67 5.069±0.00 5.783±2.13 2.983±0.00 24.012±20.53 25.976±9.43 123.017±36.93

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000018 TAS regulation of DNA recombination
GO:0005488 IEA binding
GO:0005515 IPI:IEA protein binding
GO:0005634 IDA:IEA nucleus
GO:0005654 TAS nucleoplasm
GO:0005737 IDA:IEA cytoplasm
GO:0005829 TAS cytosol
GO:0006259 TAS DNA metabolic process
GO:0006606 IEA protein import into nucleus
GO:0006607 IDA NLS-bearing protein import into nucleus
GO:0008139 IDA nuclear localization sequence binding
GO:0008565 IEA protein transporter activity
GO:0016020 IDA membrane
GO:0016032 IEA viral process
GO:0019221 TAS cytokine-mediated signaling pathway
GO:0042826 IPI histone deacetylase binding
GO:0044822 IDA poly(A) RNA binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000018506 Kpna2-001 protein_coding Mus_musculus 0 2023
ENSMUST00000086423 Gm10184-201 protein_coding Mus_musculus 0 1954
ENSMUST00000091289 Gm10259-001 processed_pseudogene Mus_musculus 0 1838
ENSMUST00000119855 Gm12919-001 processed_pseudogene Mus_musculus 0 1759
ENSMUST00000121704 Gm5832-001 processed_pseudogene Mus_musculus 0 1659
ENSMUST00000145331 Kpna2-007 nonsense_mediated_decay Mus_musculus 0 1633
ENSMUST00000121510 Gm16436-001 processed_pseudogene Mus_musculus 0 1631
ENSMUST00000138638 Med20-003 retained_intron Mus_musculus 0 1539
ENSMUST00000120025 Kpna2-ps-001 processed_pseudogene Mus_musculus 0 1471
ENSMUST00000118899 Gm4991-001 processed_pseudogene Mus_musculus 0 1400
ENSMUST00000120962 Gm13310-001 processed_pseudogene Mus_musculus 0 1133

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