C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: PHD finger protein 12
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000332830 PHF12-001 ENSG00000109118 9606 - 17:28905250-28951771 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonKidneyLiverLungMuscleOvaryPlacentaTestisENST00000332830
Transcript ID Adipose Adrenal Brain Breast Colon Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000332830 3.100±0.00 8.157±0.00 0.652±0.00 2.385±1.74 5.802±0.00 4.877±0.00 0.859±0.00 2.886±2.35 2.275±1.96 7.266±4.07 3.481±1.81 8.043±3.76

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0000WH CIL_0000WH_0002 CGP 17:28897781-28951771

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000122 IDA negative regulation of transcription from RNA polymerase II promoter
GO:0001106 IDA RNA polymerase II transcription corepressor activity
GO:0001222 IEA transcription corepressor binding
GO:0005515 IPI:IEA protein binding
GO:0005634 IDA nucleus
GO:0005730 IDA nucleolus
GO:0006351 IEA transcription, DNA-templated
GO:0008270 IEA zinc ion binding
GO:0016580 IDA Sin3 complex
GO:0017053 IDA transcriptional repressor complex
GO:0035091 IDA phosphatidylinositol binding
GO:0045892 IDA negative regulation of transcription, DNA-templated

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000049167 Phf12-001 protein_coding Mus_musculus 0 6333
ENSMUST00000108360 Phf12-002 protein_coding Mus_musculus 0 4037
ENSMUST00000153428 Phf12-003 protein_coding Mus_musculus 0 1064
ENSMUST00000125079 Phf12-008 retained_intron Mus_musculus 0 859
ENSMUST00000131680 Phf12-004 nonsense_mediated_decay Mus_musculus 0 780
ENSMUST00000153747 Phf12-005 nonsense_mediated_decay Mus_musculus 0 440
ENSMUST00000141620 Phf12-007 retained_intron Mus_musculus 0 353
ENSMUST00000123662 Phf12-006 nonsense_mediated_decay Mus_musculus 0 311

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