C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: karyopherin alpha 4 (importin alpha 3)
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000334256 KPNA4-001 ENSG00000186432 9606 - 3:160494995-160565588 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000334256
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000334256 10.477±0.00 5.700±0.00 2.103±0.00 6.140±1.64 8.388±1.86 6.918±2.10 9.085±5.24 4.153±2.72 6.165±3.43 7.022±0.70 18.303±10.66 6.612±1.70 6.486±2.95 13.659±1.74

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0001ZB CIL_0001ZB_0001 CGP 3:160432445-160565588

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005488 IEA binding
GO:0005515 IPI:IEA protein binding
GO:0005634 IEA nucleus
GO:0005654 TAS nucleoplasm
GO:0005737 IEA cytoplasm
GO:0005829 TAS cytosol
GO:0006606 IEA protein import into nucleus
GO:0006607 TAS NLS-bearing protein import into nucleus
GO:0008565 IEA protein transporter activity
GO:0019221 TAS cytokine-mediated signaling pathway
GO:0042542 IEA response to hydrogen peroxide
GO:0070062 IDA extracellular vesicular exosome

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000029353 Kpna4-001 protein_coding Mus_musculus 0 5171
ENSMUST00000127497 Kpna4-002 protein_coding Mus_musculus 0 599
ENSMUST00000034431 Tmem170-201 protein_coding Mus_musculus 0.00000008 66
ENSMUST00000173269 Neu1-002 retained_intron Mus_musculus 0.00005 57
ENSMUST00000138202 Usp12-002 processed_transcript Mus_musculus 0.0006 53
ENSMUST00000085614 Usp12-001 protein_coding Mus_musculus 0.0006 53

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