C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: AT rich interactive domain 2 (ARID, RFX-like)
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000334344 ARID2-001 ENSG00000189079 9606 + 12:45729665-45908040 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000334344
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000334344 1.686±0.00 0.463±0.00 2.665±0.00 0.638±0.37 2.015±1.35 2.233±1.19 1.158±0.00 0.734±0.38 1.911±1.72 2.839±1.70 0.736±0.24 1.875±1.27 0.739±0.08 2.306±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0006R9 CIL_0006R9_0001 CGP 12:45729665-45992120

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003677 IEA DNA binding
GO:0005488 IEA binding
GO:0005515 IPI protein binding
GO:0005622 IEA intracellular
GO:0005634 IEA nucleus
GO:0006337 IDA nucleosome disassembly
GO:0006351 IEA transcription, DNA-templated
GO:0006355 IEA regulation of transcription, DNA-templated
GO:0016568 IEA chromatin modification
GO:0046872 IEA metal ion binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000096250 Arid2-001 protein_coding Mus_musculus 0 8780
ENSMUST00000176739 Arid2-003 retained_intron Mus_musculus 0 2386
ENSMUST00000134985 Arid2-002 protein_coding Mus_musculus 0 933
ENSDART00000019144 arid2-001 protein_coding Danio_rerio 2e-28 134

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