C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: collagen, type IV, alpha 6
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000334504 COL4A6-002 ENSG00000197565 9606 - X:108155607-108438430 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBreastColonKidneyLungOvaryPlacentaTestisENST00000334504
Transcript ID Adipose Breast Colon Kidney Lung Ovary Placenta Testis
ENST00000334504 0.030±0.00 0.366±0.00 0.285±0.02 2.161±0.00 0.764±0.00 1.082±0.69 1.819±0.95 1.601±0.80

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0006JL CIL_0006JL_0001 CGP X:108091668-108439497
CIL_000172 CIL_000172_0002 CGP X:108155607-108697545

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005201 IEA extracellular matrix structural constituent
GO:0005576 TAS extracellular region
GO:0005581 IEA collagen trimer
GO:0005587 NAS collagen type IV trimer
GO:0005788 TAS endoplasmic reticulum lumen
GO:0007155 IEA cell adhesion
GO:0022617 TAS extracellular matrix disassembly
GO:0030198 TAS extracellular matrix organization
GO:0030574 TAS collagen catabolic process

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000101205 Col4a6-001 protein_coding Mus_musculus 0 4625

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