C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: parvin, alpha
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000334956 PARVA-001 ENSG00000197702 9606 + 11:12377185-12530801 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000334956
Transcript ID Adipose Adrenal Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000334956 32.159±0.00 10.175±0.00 4.049±2.81 11.540±8.12 13.071±9.60 4.961±3.84 4.649±4.28 6.187±3.67 11.404±0.00 1.021±0.23 13.820±3.06 20.375±1.39 7.055±4.78

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008T3 CIL_0008T3_0001 VISTA 11:11882278-12483702
CIL_0008YS CIL_0008YS_0001 VISTA 11:11899653-12500760
CIL_0007SQ CIL_0007SQ_0001 VISTA 11:11959946-12561868
CIL_0003PF CIL_0003PF_0001 CGP 11:12276080-12530801
CIL_0003PG CIL_0003PG_0001 CGP 11:12377185-12944483

Gene Ontology

GO IDEvidence TypeGO Description
GO:0002040 ISS sprouting angiogenesis
GO:0003148 ISS outflow tract septum morphogenesis
GO:0003779 IEA actin binding
GO:0005515 IPI:IEA protein binding
GO:0005634 IEA nucleus
GO:0005737 IDA cytoplasm
GO:0005829 TAS cytosol
GO:0005886 IEA plasma membrane
GO:0005925 IDA focal adhesion
GO:0007155 IEA cell adhesion
GO:0007163 ISS establishment or maintenance of cell polarity
GO:0008360 IEA regulation of cell shape
GO:0015629 IDA actin cytoskeleton
GO:0030027 IEA lamellipodium
GO:0031532 IEA actin cytoskeleton reorganization
GO:0034113 ISS heterotypic cell-cell adhesion
GO:0034329 TAS cell junction assembly
GO:0034446 IMP substrate adhesion-dependent cell spreading
GO:0060271 IMP cilium morphogenesis
GO:0070252 ISS actin-mediated cell contraction
GO:0071670 ISS smooth muscle cell chemotaxis

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000033030 Parva-001 protein_coding Mus_musculus 0 1637
ENSMUST00000106643 Parva-002 protein_coding Mus_musculus 0 1515
ENSMUST00000106640 Parva-004 protein_coding Mus_musculus 0 1336
ENSDART00000011351 parvab-001 protein_coding Danio_rerio 0 765
ENSDART00000056847 parvab-201 protein_coding Danio_rerio 0 765
ENSMUST00000126047 Parva-006 processed_transcript Mus_musculus 0 307

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