C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: lysine (K)-specific demethylase 4B
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000025036 Kdm4b-001 ENSMUSG00000024201 10090 + 17:56326074-56402864 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000025036
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000025036 8.916±0.81 7.462±1.80 7.985±1.18 16.431±9.98 8.868±4.51 8.367±2.69 3.411±0.87 4.896±0.54 2.198±0.50 6.251±1.78 3.863±0.38 12.608±5.75 5.082±2.55 1.716±0.40

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0005GV CIL_0005GV_0003 CGP 17:56303321-56402870
CIL_0005ON CIL_0005ON_0002 CGP 17:56326062-56476483

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005634 IEA nucleus
GO:0005925 IEA focal adhesion
GO:0006351 IEA transcription, DNA-templated
GO:0006355 IEA regulation of transcription, DNA-templated
GO:0008270 IEA zinc ion binding
GO:0016568 IEA chromatin modification
GO:0030054 IEA cell junction
GO:0051213 IEA dioxygenase activity
GO:0055114 IEA oxidation-reduction process

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSDART00000034084 kdm4b-201 protein_coding Danio_rerio 0 730
ENSDART00000128161 kdm4b-001 protein_coding Danio_rerio 0 730
ENST00000159111 KDM4B-001 protein_coding Homo_sapiens 0 1279
ENST00000335080 KDM4D-001 protein_coding Homo_sapiens 0 416
ENST00000372396 KDM4A-001 protein_coding Homo_sapiens 0 477
ENST00000381759 KDM4B-011 protein_coding Homo_sapiens 0 1280
ENST00000450979 KDM4E-001 protein_coding Homo_sapiens 0 388
ENST00000463151 KDM4A-002 processed_transcript Homo_sapiens 0 427
ENST00000485249 KDM4A-003 processed_transcript Homo_sapiens 0 407
ENST00000536461 KDM4B-002 protein_coding Homo_sapiens 0 1358
ENST00000536741 KDM4D-002 protein_coding Homo_sapiens 0 416
ENST00000545950 RP11-735A19.2-001 unprocessed_pseudogene Homo_sapiens 0 416
ENST00000588166 KDM4B-003 processed_transcript Homo_sapiens 0 261
ENST00000588361 KDM4B-012 protein_coding Homo_sapiens 0 521
ENST00000588961 KDM4B-008 processed_transcript Homo_sapiens 0 250
ENST00000589104 KDM4B-007 retained_intron Homo_sapiens 0 1136
ENST00000592175 KDM4B-005 processed_transcript Homo_sapiens 0 514
ENST00000610872 KDM4D-201 protein_coding Homo_sapiens 0 416
ENST00000611640 KDM4B-201 protein_coding Homo_sapiens 0 1358
ENST00000624683 KDM4B-009 TEC Homo_sapiens 3e-34 152

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