C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: trinucleotide repeat containing 6B
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000335727 TNRC6B-002 ENSG00000100354 9606 + 22:40177942-40335808 protein_coding

Homo sapiens EnsemblGRCh38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBrainColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000335727
Transcript ID Adipose Brain Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000335727 0.647±0.00 0.803±0.18 1.258±0.47 1.487±0.60 1.979±0.00 2.599±0.00 0.613±0.00 0.887±0.27 1.090±0.59 0.772±0.78 2.871±0.96

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0005W3 CIL_0005W3_0001 CGP 22:39994949-40335808
CIL_0006F2 CIL_0006F2_0001 CGP 22:40044817-40369367

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000166 IEA nucleotide binding
GO:0005515 IPI:IEA protein binding
GO:0005829 TAS cytosol
GO:0006417 IEA regulation of translation
GO:0007173 TAS epidermal growth factor receptor signaling pathway
GO:0007219 TAS Notch signaling pathway
GO:0008543 TAS fibroblast growth factor receptor signaling pathway
GO:0010467 TAS gene expression
GO:0031047 IMP gene silencing by RNA
GO:0038095 TAS Fc-epsilon receptor signaling pathway
GO:0044822 IDA poly(A) RNA binding
GO:0045087 TAS innate immune response
GO:0048011 TAS neurotrophin TRK receptor signaling pathway
GO:0048015 TAS phosphatidylinositol-mediated signaling
GO:0060213 IMP positive regulation of nuclear-transcribed mRNA poly(A) tail shortening
GO:1900153 IMP positive regulation of nuclear-transcribed mRNA catabolic process, deadenylation-dependent decay

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000067689 Tnrc6b-201 protein_coding Mus_musculus 0 4735
ENSDART00000153428 tnrc6b-001 protein_coding Danio_rerio 3e-19 104
ENSDART00000114402 tnrc6b-201 protein_coding Danio_rerio 4e-18 100

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