C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: heterogeneous nuclear ribonucleoprotein C (C1/C2)
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000336053 HNRNPC-001 ENSG00000092199 9606 - 14:21209136-21269494 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonHeartKidneyLiverLungMuscleOvaryENST00000336053
Transcript ID Adipose Adrenal Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary
ENST00000336053 9.503±0.00 18.413±0.00 11.503±0.00 9.210±0.00 4.915±0.00 4.580±0.00 14.116±0.00 5.123±1.10 15.605±0.00 3.374±0.00 11.424±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00027N CIL_00027N_0001 CGP 14:21154865-21269494
CIL_00027O CIL_00027O_0001 CGP 14:21209136-21351301

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000166 IEA nucleotide binding
GO:0003676 IEA nucleic acid binding
GO:0019013 IEA viral nucleocapsid
GO:0030529 IEA ribonucleoprotein complex
GO:0038032 IEA termination of G-protein coupled receptor signaling pathway

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000122361 Gm12696-001 processed_pseudogene Mus_musculus 0 1027
ENSMUST00000117947 Gm12445-001 processed_pseudogene Mus_musculus 0 798
ENSMUST00000164655 Hnrnpc-202 protein_coding Mus_musculus 0 726
ENSMUST00000111610 Hnrnpc-201 protein_coding Mus_musculus 0 726
ENSMUST00000174284 Gm18889-001 processed_pseudogene Mus_musculus 0 684
ENSMUST00000190510 RP24-495G2.1-001 processed_pseudogene Mus_musculus 0 335

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