C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: heterogeneous nuclear ribonucleoprotein C
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000111610 Hnrnpc-201 ENSMUSG00000060373 10090 - 14:52073380-52104028 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000111610
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000111610 25.286±14.05 20.331±4.63 24.700±12.31 27.591±4.38 23.879±2.29 21.775±5.37 17.024±3.52 20.882±4.80 30.749±23.48 25.791±7.96 5.154±0.92 34.998±12.07 44.032±16.04 14.138±3.27

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00027N CIL_00027N_0002 CGP 14:52035082-52104028
CIL_00027O CIL_00027O_0002 CGP 14:52073380-52163546

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000166 IEA nucleotide binding
GO:0003729 IDA mRNA binding
GO:0005634 IDA nucleus
GO:0005681 ISS spliceosomal complex
GO:0006397 IEA mRNA processing
GO:0008380 IEA RNA splicing
GO:0045120 IDA pronucleus

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000317869 HNRNPCL1-001 protein_coding Homo_sapiens 0 573
ENST00000323770 HNRNPCL2-001 protein_coding Homo_sapiens 0 409
ENST00000336053 HNRNPC-001 protein_coding Homo_sapiens 0 726
ENST00000399515 HNRNPCP2-001 processed_pseudogene Homo_sapiens 0 640
ENST00000420743 HNRNPC-006 protein_coding Homo_sapiens 0 1384
ENST00000430246 HNRNPC-015 protein_coding Homo_sapiens 0 1295
ENST00000449098 HNRNPC-201 protein_coding Homo_sapiens 0 1282
ENST00000456056 HNRNPCP7-001 processed_pseudogene Homo_sapiens 0 869
ENST00000457130 HNRNPCP10-001 processed_pseudogene Homo_sapiens 0 322
ENST00000525816 HNRNPCP6-001 processed_pseudogene Homo_sapiens 0 442
ENST00000528764 HNRNPCP8-001 unprocessed_pseudogene Homo_sapiens 0 394
ENST00000553300 HNRNPC-002 protein_coding Homo_sapiens 0 959
ENST00000553444 HNRNPC-032 retained_intron Homo_sapiens 0 695
ENST00000553614 HNRNPC-024 retained_intron Homo_sapiens 0 662
ENST00000553753 HNRNPC-014 protein_coding Homo_sapiens 0 691
ENST00000554383 HNRNPC-027 protein_coding Homo_sapiens 0 580
ENST00000554417 HNRNPC-025 retained_intron Homo_sapiens 0 453
ENST00000554455 HNRNPC-005 protein_coding Homo_sapiens 0 1954
ENST00000554539 HNRNPC-021 protein_coding Homo_sapiens 0 634
ENST00000554891 HNRNPC-030 protein_coding Homo_sapiens 0 531
ENST00000554969 HNRNPC-017 protein_coding Homo_sapiens 0 1297
ENST00000555137 HNRNPC-033 protein_coding Homo_sapiens 0 826
ENST00000555176 HNRNPC-034 protein_coding Homo_sapiens 0 532
ENST00000555215 HNRNPC-028 protein_coding Homo_sapiens 0 909
ENST00000555309 HNRNPC-010 protein_coding Homo_sapiens 0 1868
ENST00000555585 HNRNPC-031 retained_intron Homo_sapiens 0 429
ENST00000555883 HNRNPC-016 protein_coding Homo_sapiens 0 671
ENST00000555914 HNRNPC-011 protein_coding Homo_sapiens 0 1210
ENST00000556142 HNRNPC-020 protein_coding Homo_sapiens 0 1024
ENST00000556226 HNRNPC-035 protein_coding Homo_sapiens 0 532
ENST00000556513 HNRNPC-018 protein_coding Homo_sapiens 0 1074
ENST00000556628 HNRNPC-022 protein_coding Homo_sapiens 0 985
ENST00000556897 HNRNPC-019 protein_coding Homo_sapiens 0 920
ENST00000557157 HNRNPC-037 protein_coding Homo_sapiens 0 688
ENST00000557201 HNRNPC-007 protein_coding Homo_sapiens 0 1552
ENST00000557336 HNRNPC-029 protein_coding Homo_sapiens 0 324
ENST00000557442 HNRNPC-008 nonsense_mediated_decay Homo_sapiens 0 861
ENST00000557768 HNRNPC-036 protein_coding Homo_sapiens 0 326
ENST00000560385 HNRNPCP3-001 processed_pseudogene Homo_sapiens 0 556
ENST00000571636 HNRNPCP4-001 processed_pseudogene Homo_sapiens 0 917
ENST00000613240 CR854858.1-201 protein_coding Homo_sapiens 0 425
ENST00000617044 HNRNPCL1-201 protein_coding Homo_sapiens 0 614
ENST00000617807 CH17-409J4.1-001 protein_coding Homo_sapiens 0 425
ENST00000619361 HNRNPCL2-201 protein_coding Homo_sapiens 0 420
ENST00000621994 HNRNPCL2-001 protein_coding Homo_sapiens 0 420

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