C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: heterogeneous nuclear ribonucleoprotein C (C1/C2)
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000092199 HNRNPC 9606 - 14:21209136-21269494 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000336053 HNRNPC-001 21209136-21269494 protein_coding
  ENST00000420743 HNRNPC-006 21211106-21269425 protein_coding
  ENST00000430246 HNRNPC-015 21210556-21265516 protein_coding
  ENST00000449098 HNRNPC-201 21210556-21234245 protein_coding
  ENST00000553300 HNRNPC-002 21210937-21269442 protein_coding
  ENST00000553444 HNRNPC-032 21210937-21212002 retained_intron
  ENST00000553614 HNRNPC-024 21230898-21269423 retained_intron
  ENST00000553753 HNRNPC-014 21210582-21269403 protein_coding
  ENST00000554383 HNRNPC-027 21211418-21269442 protein_coding
  ENST00000554417 HNRNPC-025 21211490-21230660 retained_intron
  ENST00000554455 HNRNPC-005 21210550-21269425 protein_coding
  ENST00000554539 HNRNPC-021 21211256-21269445 protein_coding
  ENST00000554891 HNRNPC-030 21213105-21269392 protein_coding
  ENST00000554969 HNRNPC-017 21210534-21269425 protein_coding
  ENST00000555127 HNRNPC-026 21262993-21269389 retained_intron
  ENST00000555137 HNRNPC-033 21212997-21269411 protein_coding
  ENST00000555176 HNRNPC-034 21230332-21268651 protein_coding
  ENST00000555215 HNRNPC-028 21212961-21269409 protein_coding
  ENST00000555309 HNRNPC-010 21210613-21269421 protein_coding
  ENST00000555585 HNRNPC-031 21211459-21213419 retained_intron
  ENST00000555883 HNRNPC-016 21210933-21269400 protein_coding
  ENST00000555914 HNRNPC-011 21210613-21269404 protein_coding
  ENST00000556142 HNRNPC-020 21210546-21269423 protein_coding
  ENST00000556226 HNRNPC-035 21230319-21269411 protein_coding
  ENST00000556513 HNRNPC-018 21210933-21269425 protein_coding
  ENST00000556628 HNRNPC-022 21210923-21269410 protein_coding
  ENST00000556897 HNRNPC-019 21210966-21262677 protein_coding
  ENST00000557033 HNRNPC-023 21262603-21269442 retained_intron
  ENST00000557157 HNRNPC-037 21211224-21231422 protein_coding
  ENST00000557201 HNRNPC-007 21210937-21269425 protein_coding
  ENST00000557336 HNRNPC-029 21233995-21269406 protein_coding
  ENST00000557442 HNRNPC-008 21210904-21269424 nonsense_mediated_decay
  ENST00000557768 HNRNPC-036 21234031-21269425 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000336053ENST00000430246ENST00000449098ENST00000553300ENST00000554383ENST00000554455ENST00000555883ENST00000556142ENST00000556897ENST00000557157ENST00000557201ENST00000557442
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000336053 9.503±0.00 18.413±0.00 N/A 11.503±0.00 9.210±0.00 4.915±0.00 4.580±0.00 14.116±0.00 5.123±1.10 15.605±0.00 3.374±0.00 11.424±0.00 N/A N/A
ENST00000430246 N/A N/A 6.972±0.00 N/A 12.328±0.00 5.298±0.00 4.795±0.00 N/A 6.721±0.00 N/A N/A N/A N/A N/A
ENST00000449098 45.413±0.00 67.811±0.00 N/A N/A 38.798±0.00 88.030±0.00 N/A 47.878±0.00 18.426±0.00 39.581±0.00 22.968±0.00 69.301±8.69 58.343±1.91 76.698±30.14
ENST00000553300 28.970±0.00 N/A N/A 31.507±0.00 22.995±0.00 44.210±31.35 18.404±3.08 79.960±0.00 21.393±1.25 63.803±44.51 29.745±16.73 75.959±30.42 99.057±23.32 N/A
ENST00000554383 N/A N/A 20.329±0.00 31.913±0.00 52.266±0.00 17.288±0.00 N/A 51.585±0.00 N/A 44.890±0.00 N/A N/A N/A N/A
ENST00000554455 N/A 34.415±0.00 N/A N/A 23.843±0.00 N/A 13.566±0.00 N/A N/A N/A N/A 67.413±20.56 36.568±0.00 N/A
ENST00000555883 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 64.485±0.00 47.879±0.00
ENST00000556142 N/A N/A N/A 90.312±0.00 N/A 10.240±0.00 10.344±0.00 N/A 10.234±0.00 37.149±0.00 17.929±0.00 N/A N/A N/A
ENST00000556897 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 101.305±0.00 189.720±0.00 129.467±0.00
ENST00000557157 N/A N/A 22.720±0.00 43.812±0.00 N/A 17.259±0.00 N/A N/A 27.997±0.00 N/A N/A 69.051±0.00 N/A N/A
ENST00000557201 48.732±0.00 53.399±0.00 N/A N/A 37.569±0.00 92.025±0.00 N/A N/A 13.250±0.00 N/A 8.906±0.00 N/A 58.192±3.57 108.448±0.00
ENST00000557442 N/A N/A N/A N/A N/A N/A N/A N/A 13.070±0.00 N/A N/A N/A N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00027N CIL_00027N_0001 CGP 14:21154865-21269494
CIL_00027O CIL_00027O_0001 CGP 14:21209136-21351301

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000166 IEA nucleotide binding
GO:0000398 IC mRNA splicing, via spliceosome
GO:0000790 IDA nuclear chromatin
GO:0000978 IDA RNA polymerase II core promoter proximal region sequence-specific DNA binding
GO:0000980 IDA RNA polymerase II distal enhancer sequence-specific DNA binding
GO:0001649 IDA osteoblast differentiation
GO:0003676 IEA nucleic acid binding
GO:0003723 NAS RNA binding
GO:0003730 IDA mRNA 3'-UTR binding
GO:0005515 IPI protein binding
GO:0005634 IDA nucleus
GO:0005654 TAS nucleoplasm
GO:0005681 IDA spliceosomal complex
GO:0005829 IDA cytosol
GO:0008266 IDA poly(U) RNA binding
GO:0008380 TAS RNA splicing
GO:0010467 TAS gene expression
GO:0016020 IDA membrane
GO:0019013 IEA viral nucleocapsid
GO:0030529 IEA ribonucleoprotein complex
GO:0031492 IDA nucleosomal DNA binding
GO:0038032 IEA termination of G-protein coupled receptor signaling pathway
GO:0042802 IPI identical protein binding
GO:0043044 IDA ATP-dependent chromatin remodeling
GO:0043234 IDA protein complex
GO:0044822 IDA poly(A) RNA binding
GO:0070062 IDA extracellular vesicular exosome
GO:0070935 IMP 3'-UTR-mediated mRNA stabilization
GO:0071013 IDA catalytic step 2 spliceosome

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000022579 zgc:55733 zgc:55733 protein_coding Danio_rerio
ENSDARG00000053810 hnrnpc heterogeneous nuclear ribonucleoprotein C protein_coding Danio_rerio
ENSMUSG00000060373 Hnrnpc heterogeneous nuclear ribonucleoprotein C protein_coding Mus_musculus

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