C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: high mobility group 20A
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000336216 HMG20A-001 ENSG00000140382 9606 + 15:77420651-77485607 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBrainBreastColonHeartKidneyLiverMuscleOvaryPlacentaTestisENST00000336216
Transcript ID Adipose Brain Breast Colon Heart Kidney Liver Muscle Ovary Placenta Testis
ENST00000336216 2.147±0.00 1.436±0.00 2.177±0.00 0.811±0.25 0.253±0.00 1.854±0.00 0.851±0.00 0.405±0.23 2.156±1.12 2.556±0.22 3.660±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0001UO CIL_0001UO_0001 CGP 15:77100656-77485607
CIL_0003SZ CIL_0003SZ_0001 CGP 15:77420412-77820900

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003677 NAS DNA binding
GO:0003700 NAS sequence-specific DNA binding transcription factor activity
GO:0005515 IPI protein binding
GO:0005634 NAS nucleus
GO:0006325 NAS chromatin organization
GO:0006351 IEA transcription, DNA-templated
GO:0006355 NAS regulation of transcription, DNA-templated

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000034879 Hmg20a-201 protein_coding Mus_musculus 0 2028

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