C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: sel-1 suppressor of lin-12-like (C. elegans)
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000336735 SEL1L-001 ENSG00000071537 9606 - 14:81471549-81533861 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000336735
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000336735 10.265±0.00 4.573±0.00 4.780±0.00 7.261±1.68 13.359±0.00 7.405±2.67 4.337±0.21 7.515±1.54 8.895±1.41 6.900±3.42 3.131±1.42 3.764±2.28 4.932±0.90 3.444±0.65

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00087I CIL_00087I_0001 VISTA 14:81013259-81617678
CIL_0000TE CIL_0000TE_0001 CGP 14:81260656-81533861

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005515 IPI protein binding
GO:0005783 IEA endoplasmic reticulum
GO:0007219 IEA Notch signaling pathway
GO:0016021 IEA integral component of membrane
GO:0034976 IEA response to endoplasmic reticulum stress

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000021347 Sel1l-001 protein_coding Mus_musculus 0 2817
ENSMUST00000178462 Sel1l-201 protein_coding Mus_musculus 0 2449
ENSMUST00000167466 Sel1l-006 protein_coding Mus_musculus 0 2446
ENSMUST00000166691 Sel1l-005 retained_intron Mus_musculus 0 2095
ENSMUST00000167594 Sel1l-004 retained_intron Mus_musculus 0 1299
ENSMUST00000171959 Sel1l-007 retained_intron Mus_musculus 0 689
ENSMUST00000171465 Sel1l-008 retained_intron Mus_musculus 0 449
ENSMUST00000172246 Sel1l-003 retained_intron Mus_musculus 0 372
ENSMUST00000165282 Sel1l-009 processed_transcript Mus_musculus 0 220

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